Result for the search of Gene Name/NCBI ID(s): 'PLS3'

Total of fusion sequences: 5 (from 1493742 parsed EST/mRNAs. Last update 2019-12-05 16:32:10)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	ChimerDB AK291194 ANNOTATION OF CHIMERA FUSION GenBank ID: AK291194 FASTA UniProtKB: P13797 Plastin-3 (T-plastin) Fusion Gene(s): PLS3 Head Gene (1) Alignment: COL4A5 | OMIM: 303630 Tail Gene (2) Alignment: PLS3 | OMIM: 300131 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1287 X + 108439790 108440206 1 1 protein-coding 5358 X + 115610242 115650031 17 1 protein-coding 2786 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to EF-hand_5 (PF13202, IPR002048) 25 149 159 0.037 0.100 EF hand EF-hand_7 (PF13499, IPR011992) 71 155 223 1e-14 41.100 EF-hand domain pair CH (PF00307, IPR001715, SM00033) 109 264 381 1e-29 89.200 Calponin homology (CH) domain Updated: 2019-01-29 Owner: ChiTaRS	COL4A5 A0A0A0U994 A0A2R8Y5W0 A7MBN3 H0Y998 H0Y9H0 H0Y9R8 P29400 Q49AM6 V9H0C7 NM_033380.2	1..415 100.0%	+ X	PLS3 A0A0A0MSQ0 A7E2S2 F2Z2Z9 H7C4N2 P13797 U3KQI3 NM_001282337.1	415..2786 100.0%	+ X	1 0 0	exon-exon
2 Homo Sapiens	EC577758 ANNOTATION OF CHIMERA FUSION GenBank ID: EC577758 FASTA Head Gene (1) Alignment: MEI1 | OMIM: 608797 Tail Gene (2) Alignment: PLS3 | OMIM: 300131 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 150365 22 - 41759598 41759831 0 0 protein-coding 5358 X + 115638450 115638817 0 0 protein-coding 97 hg38 Updated: 2019-03-17 Owner: ChiTaRS	MEI1 F5GZT0 H0Y787 Q4G0I1 Q5TIA1 XM_011529935.2	7..40 96.6%	- 22	PLS3 A0A0A0MSQ0 A7E2S2 F2Z2Z9 H7C4N2 P13797 U3KQI3 NM_001282337.1	30..97 95.6%	+ X	1 0 0	intron-intron
3 Homo Sapiens	BE177612 ANNOTATION OF CHIMERA FUSION GenBank ID: BE177612 FASTA Head Gene (1) Alignment: ADAR | OMIM: 146920 Tail Gene (2) Alignment: PLS3 | OMIM: 300131 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 103 1 - 154583454 154583606 1 1 protein-coding 5358 X - 115629902 115640475 13 1 protein-coding 672 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to z-alpha (PF02295, IPR000607, SM00550) 67 201 267 1.9e-32 97.500 Adenosine deaminase z-alpha domain dsrm (PF00035, IPR014720, SM00358) 67 570 635 1.8e-15 43.700 Double-stranded RNA binding motif A_deamin (PF02137, IPR002466, SM00552) 325 952 1281 1.4e-109 352.500 Adenosine-deaminase (editase) domain Updated: 2019-02-20 Owner: ChiTaRS	ADAR A0A3B3IRQ9 A0A3B3ISU1 A0A3B3ISX1 A0A3B3ITG9 A2IBT1 A2IBT2 D3DV75 H0YCK3 P55265 Q9BYM5 Q9BYM6 XM_006711113.2	8..156 100.0%	- 1	PLS3 A0A0A0MSQ0 A7E2S2 F2Z2Z9 H7C4N2 P13797 U3KQI3 NM_001282337.1	148..672 99.7%	- X	1 0 0	exon-exon
4 Homo Sapiens	BQ300629 ANNOTATION OF CHIMERA FUSION GenBank ID: BQ300629 FASTA Head Gene (1) Alignment: PLS3 | OMIM: 300131 Tail Gene (2) Alignment: HSPH1 | OMIM: 610703 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 5358 X - 115636859 115640447 11 1 protein-coding 10808 13 - 31143791 31148053 12 1 oncogene 595 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to HSP70 (PF00012, IPR013126) 599 352 637 3.9e-21 60.800 Hsp70 protein Spectrin (PF00435, IPR002017) 105 589 661 0.0011 5.800 Spectrin repeat Updated: 2019-02-23 Owner: ChiTaRS	PLS3 A0A0A0MSQ0 A7E2S2 F2Z2Z9 H7C4N2 P13797 U3KQI3 NM_001282337.1	1..158 98.8%	- X	HSPH1 A0A024RDQ0 A0A024RDS1 A0A0A0MSM0 Q5TBM3 Q92598 R4GN69 XM_011534887.3	143..576 100.0%	- 13	1 0 0	exon-exon
5 Homo Sapiens	AW019944 ANNOTATION OF CHIMERA FUSION GenBank ID: AW019944 FASTA Head Gene (1) Alignment: PLS3 | OMIM: 300131 Tail Gene (2) Alignment: TDRD3 | OMIM: 614392 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 5358 X + 115650245 115650672 18 1 protein-coding 81550 13 - 60565046 60565561 2 0 protein-coding 451 hg38 Updated: 2019-02-07 Owner: ChiTaRS	PLS3 A0A0A0MSQ0 A7E2S2 F2Z2Z9 H7C4N2 P13797 U3KQI3 NM_001282337.1	8..435 100.0%	+ X	TDRD3 A0A024QZE0 B1AMN9 F2Z2Y2 Q9H7E2 XM_005266556.4	423..451 100.0%	- 13	1 0 0	exon-intron

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