Search Database Collection
 

Choose parameters to search by

Updates:

Search filters
Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'PKNOX1'

Total of fusion sequences: 12 (from 1493742 parsed EST/mRNAs. Last update 2019-12-05 16:32:10)

Organism Fusion:
Graphical View,
Annotation,
PPI network 		Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y) 		Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences		 Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript		 Start1..End1
Ident1% 		Strand1
Chrom1 		Name(s)2,
transcript		 Start2..End2
Ident2% 		Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Homo Sapiens		SplGraphs

ANNOTATION OF CHIMERA FUSION

GenBank ID: BE084180 FASTA
Head Gene (1) Alignment: HECTD1 Tail Gene (2) Alignment: PKNOX1 | OMIM: 602100 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
2583114-3113498231135531231protein-coding531621+430301834303020711oncogene,
tumor suppressor		 514 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
Ank_2 (PF12796, IPR020683) 84 400 485 2.9e-14 39.800 Ankyrin repeats (3 copies)
Updated: 2019-02-20
Owner: ChiTaRS
XM_017021149.2		30..300
99.3%		-
14
NM_001320694.1		299..323
100.0%		+
21		1
0
0		exon-exon
2
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: U68727 FASTA
UniProtKB: P55347 Homeobox protein PKNOX1 (Homeobox protein PREP-1) (PBX/knotted homeobox 1)
Fusion Gene(s): PKNOX1 PREP1
Head Gene (1) Alignment: PKNOX1 | OMIM: 602100 Tail Gene (2) Alignment: GPM6B | OMIM: 300051 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
531621+4300432243031924111oncogene,
tumor suppressor		2824X+135134471380616280protein-coding 3439 hg38
Updated: 2019-02-21
Owner: ChiTaRS
NM_001320694.1		23..3209
99.7%		+
21
NM_001001995.2		3156..3429
99.3%		+
X		1
0
0		exon-intron
3
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: DL057700 FASTA
Head Gene (1) Alignment: PKNOX1 | OMIM: 602100 Tail Gene (2) Alignment: PKNOX1 | OMIM: 602100 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
531621+430303894303067511oncogene,
tumor suppressor		531621-430306764303070011oncogene,
tumor suppressor		 315 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
Meis_PKNOX_N (PF16493, IPR032453) 86 125 178 6.9e-26 76.800 N-terminal of Homeobox Meis and PKNOX1
Homeobox_KN (PF05920, IPR008422) 40 290 329 3.4e-23 67.600 Homeobox KN domain
Updated: 2019-03-03
Owner: ChiTaRS
NM_004571.4		7..295
98.0%		+
21
NM_004571.4		290..314
100.0%		-
21		0
12445
9324		exon-exon
4
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: BE720096 FASTA
Head Gene (1) Alignment: PKNOX1 | OMIM: 602100 Tail Gene (2) Alignment: PKNOX1 | OMIM: 602100 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
531621-430131764301823071oncogene,
tumor suppressor		531621+430213524302142341oncogene,
tumor suppressor		 381 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
Meis_PKNOX_N (PF16493, IPR032453) 86 80 165 5.9e-41 125.100 N-terminal of Homeobox Meis and PKNOX1
GHBP (PF12772, IPR025871) 300 95 243 7.9e-05 8.400 Growth hormone receptor binding
Updated: 2019-02-20
Owner: ChiTaRS
NM_001320694.1		55..315
100.0%		-
21
NM_001320694.1		310..381
100.0%		+
21		0
12445
9324		exon-exon
5
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: BE083950 FASTA
Head Gene (1) Alignment: COLEC10 | OMIM: 607620 Tail Gene (2) Alignment: PKNOX1 | OMIM: 602100 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
105848-11909457411909482150protein-coding531621+430301804303020711oncogene,
tumor suppressor		 438 hg38
Updated: 2019-02-20
Owner: ChiTaRS
NM_001324095.1		11..257
98.4%		-
8
NM_001320694.1		254..281
100.0%		+
21		1
0
0		intron-exon
6
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: BG941711 FASTA
Head Gene (1) Alignment: PKNOX1 | OMIM: 602100 Tail Gene (2) Alignment: LOC106099062 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
531621+429935224299367600oncogene,
tumor suppressor		10609906211+5225464522666500 380 hg38
Updated: 2019-04-18
Owner: ChiTaRS
NM_004571.4		1..32
100.0%		+
21		 LOC106099062 29..380
100.0%		+
11		1
0
0		intron-intron
7
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: EC561106 FASTA
Head Gene (1) Alignment: MFSD2A | OMIM: 614397 Tail Gene (2) Alignment: PKNOX1 | OMIM: 602100 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
848791+399625623996265800tumor suppressor531621-429752374297525600oncogene,
tumor suppressor		 135 hg38
Updated: 2019-03-25
Owner: ChiTaRS
NM_001349821.1		35..129
97.7%		+
1
NM_004571.4		116..135
100.0%		-
21		1
0
0		intron-intron
8
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: BQ302970 FASTA
Head Gene (1) Alignment: PAPSS1 | OMIM: 603262 Tail Gene (2) Alignment: PKNOX1 | OMIM: 602100 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
90614+10765996610768716491protein-coding531621+430301824303020611oncogene,
tumor suppressor		 565 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
APS_kinase (PF01583, IPR002891) 158 51 209 6e-79 249.600 Adenylylsulphate kinase
Updated: 2019-02-22
Owner: ChiTaRS
XM_011532400.2		6..356
100.0%		+
4
NM_001320694.1		355..379
100.0%		+
21		1
0
0		exon-exon
9
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: AX340943 FASTA
Head Gene (1) Alignment: LRRC28 Tail Gene (2) Alignment: PKNOX1 | OMIM: 602100 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
12335515-992595699925961320protein-coding531621+4298458142985001100oncogene,
tumor suppressor		 125 hg38
Updated: 2019-02-17
Owner: ChiTaRS
NM_001321676.1		1..45
98.3%		-
15
NM_001320694.1		20..115
98.0%		+
21		1
0
0		intron-intron
10
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: DA500684 FASTA
Head Gene (1) Alignment: CIRBP | OMIM: 602649 Tail Gene (2) Alignment: PKNOX1 | OMIM: 602100 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
115319+1269336127141241oncogene531621+430300464303026411oncogene,
tumor suppressor		 584 hg38
Updated: 2019-01-25
Owner: ChiTaRS
XR_001753598.1		1..376
99.8%		+
19
NM_001320694.1		366..584
100.0%		+
21		1
0
0		exon-exon

T o p