Search Database Collection

 

Choose parameters to search by

Updates:

Search filters
Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'PKNOX1'

Total of fusion sequences: 12 (from 1493742 parsed EST/mRNAs. Last update 2019-12-05 16:32:10)

Organism Fusion:
Graphical View,
Annotation,
PPI network
Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y)
Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences
Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript
Start1..End1
Ident1%
Strand1
Chrom1
Name(s)2,
transcript
Start2..End2
Ident2%
Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Homo Sapiens
SplGraphs
XM_017021149.2
30..300
99.3%
-
14

NM_001320694.1
299..323
100.0%
+
21
1
0
0
exon-exon
2
Homo Sapiens

NM_001320694.1
23..3209
99.7%
+
21

NM_001001995.2
3156..3429
99.3%
+
X
1
0
0
exon-intron
3
Homo Sapiens

NM_004571.4
7..295
98.0%
+
21

NM_004571.4
290..314
100.0%
-
21
0
12445
9324
exon-exon
4
Homo Sapiens

NM_001320694.1
55..315
100.0%
-
21

NM_001320694.1
310..381
100.0%
+
21
0
12445
9324
exon-exon
5
Homo Sapiens

NM_001324095.1
11..257
98.4%
-
8

NM_001320694.1
254..281
100.0%
+
21
1
0
0
intron-exon
6
Homo Sapiens

NM_004571.4
1..32
100.0%
+
21
LOC106099062 29..380
100.0%
+
11
1
0
0
intron-intron
7
Homo Sapiens

NM_001349821.1
35..129
97.7%
+
1

NM_004571.4
116..135
100.0%
-
21
1
0
0
intron-intron
8
Homo Sapiens

XM_011532400.2
6..356
100.0%
+
4

NM_001320694.1
355..379
100.0%
+
21
1
0
0
exon-exon
9
Homo Sapiens

NM_001321676.1
1..45
98.3%
-
15

NM_001320694.1
20..115
98.0%
+
21
1
0
0
intron-intron
10
Homo Sapiens

XR_001753598.1
1..376
99.8%
+
19

NM_001320694.1
366..584
100.0%
+
21
1
0
0
exon-exon

T o p