Result for the search: Gene Name/NCBI ID(s): 'PITX1'

Total of fusion sequences: 6 (from 1,393,046 parsed EST/mRNAs. Last update 2019-09-04)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	-	16	17
Homo Sapiens	CB048904 ANNOTATION OF CHIMERA FUSION GenBank ID: CB048904 FASTA Head Gene (1) Alignment: POLR2F | OMIM: 604414 Tail Gene (2) Alignment: PITX1 | OMIM: 602149 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 5435 22 + 38010603 38010633 0 0 protein-coding 5307 5 + 135027734 135027966 1 1 oncogene 275 hg38 Updated: 2019-04-13 Owner: ChiTaRS	POLR2F B0QYL8 B0QYL9 F8WC47 H0Y2U7 H0Y439 P61218 U3KPV3 U3KPY1 U3KQB0 U3KQQ7 U3KQS8 XM_017028832.2	8..38 100.0%	+ 22	PITX1 D6R955 D6R9U1 P78337 X5D9A5 NM_002653.4	34..266 100.0%	+ 5	1 0 0	intron-exon
Homo Sapiens	CB048905 ANNOTATION OF CHIMERA FUSION GenBank ID: CB048905 FASTA Head Gene (1) Alignment: PITX1 | OMIM: 602149 Tail Gene (2) Alignment: POLR2F | OMIM: 604414 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 5307 5 - 135027734 135027966 1 1 oncogene 5435 22 - 38010603 38010633 0 0 protein-coding 275 hg38 Updated: 2019-04-13 Owner: ChiTaRS	PITX1 D6R955 D6R9U1 P78337 X5D9A5 NM_002653.4	10..242 100.0%	- 5	POLR2F B0QYL8 B0QYL9 F8WC47 H0Y2U7 H0Y439 P61218 U3KPV3 U3KPY1 U3KQB0 U3KQQ7 U3KQS8 XM_017028832.2	238..268 100.0%	- 22	1 0 0	exon-intron
Homo Sapiens	BE839314 ANNOTATION OF CHIMERA FUSION GenBank ID: BE839314 FASTA Head Gene (1) Alignment: PRKD2 | OMIM: 607074 Tail Gene (2) Alignment: PITX1 | OMIM: 602149 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 25865 19 + 46704315 46704606 15 1 protein-coding 5307 5 + 135029173 135031305 3 1 oncogene 373 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to C1_1 (PF00130, IPR002219, SM00109) 53 139 191 5.5e-18 51.000 Phorbol esters/diacylglycerol binding domain (C1 domain) Updated: 2019-02-23 Owner: ChiTaRS	PRKD2 A0JLT6 M0QXC6 M0QZ82 M0QZC2 M0R012 M0R2Z8 M0R346 Q9BZL6 NM_001079880.1	16..203 100.0%	+ 19	PITX1 D6R955 D6R9U1 P78337 X5D9A5 NM_002653.4	195..373 99.5%	+ 5	1 0 0	exon-exon
Homo Sapiens	BM825172 ANNOTATION OF CHIMERA FUSION GenBank ID: BM825172 FASTA Head Gene (1) Alignment: PITX1 | OMIM: 602149 Tail Gene (2) Alignment: PCNP | OMIM: 615210 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 5307 5 - 135028199 135028556 1 1 oncogene 57092 3 - 101576425 101576567 5 0 protein-coding 547 hg38 Updated: 2019-02-21 Owner: ChiTaRS	PITX1 D6R955 D6R9U1 P78337 X5D9A5 NM_002653.4	2..361 98.1%	- 5	PCNP A0A0B4J1Z9 G5E9V9 Q8WW12 NR_135232.1	359..498 97.9%	- 3	1 0 0	exon-intron
Homo Sapiens	BF912850 ANNOTATION OF CHIMERA FUSION GenBank ID: BF912850 FASTA Head Gene (1) Alignment: PITX1 | OMIM: 602149 Tail Gene (2) Alignment: SH3BGRL3 | OMIM: 615679 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 5307 5 + 135032069 135032300 2 0 oncogene 83442 1 + 26281164 26281479 1 1 protein-coding 544 hg38 Updated: 2019-02-20 Owner: ChiTaRS	PITX1 D6R955 D6R9U1 P78337 X5D9A5 NM_002653.4	3..236 97.0%	+ 5	SH3BGRL3 D3DPK5 Q5T123 Q86Z22 Q9H299 NM_031286.3	228..544 98.5%	+ 1	1 0 0	intron-exon
Homo Sapiens	AA872098 ANNOTATION OF CHIMERA FUSION GenBank ID: AA872098 FASTA Head Gene (1) Alignment: NCF2 | OMIM: 608515 Tail Gene (2) Alignment: PITX1 | OMIM: 602149 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 4688 1 + 183555563 183555861 1 1 protein-coding 5307 5 - 135028585 135028650 3 1 oncogene 368 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to TPR_16 (PF13432) 68 92 128 0.00025 8.100 Tetratricopeptide repeat TPR_1 (PF00515, IPR001440) 34 162 192 1.4e-09 23.900 Tetratricopeptide repeat SH3_1 (PF00018, IPR001452, SM00326) 48 292 337 5.9e-13 34.600 SH3 domain PB1 (PF00564, IPR000270, SM00666) 84 397 475 7.7e-14 37.700 PB1 domain TPR_9 (PF13371, IPR011990) 73 916 943 0.032 0.700 Tetratricopeptide repeat Updated: 2019-02-20 Owner: ChiTaRS	NCF2 A0A024R936 A0A0S2Z457 A0A0S2Z4F9 B1ALB6 B1ALB7 P19878 Q0Q616 NM_001127651.2	1..299 99.7%	+ 1	PITX1 D6R955 D6R9U1 P78337 X5D9A5 NM_002653.4	296..361 100.0%	- 5	1 0 0	exon-exon

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