Result for the search of Gene Name/NCBI ID(s): 'PACS2'

Total of fusion sequences: 5 (from 3,500,620 parsed EST/mRNAs. Last update 2020-05-11 17:25:38)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	SplGraphs BE184465 ANNOTATION OF CHIMERA FUSION GenBank ID: BE184465 FASTA Head Gene (1) Alignment: PACS2 | OMIM: 610423 Tail Gene (2) Alignment: MAP3K12 | OMIM: 600447 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 23241 14 + 105368458 105376840 9 1 protein-coding 7786 12 - 53487999 53488138 1 0 protein-coding 355 hg38 Updated: 2019-02-20 Owner: ChiTaRS	PACS2 F8VW41 F8W0B1 Q86VP3 XM_017021108.2	5..219 99.6%	+ 14	MAP3K12 A0A024RAY5 A0A024RAZ2 F8VUG4 H3BMF0 Q12852 NM_006301.3	216..355 98.6%	- 12	1 0 0	exon-intron	1HiC Hi-C contacts of chimeric junction Fusion Gene1 chromo- some1 junction start1 junction end1 Hi-C point1 Δ1 Gene2 chromo- some2 junction start2 junction end2 Hi-C point2 Δ2 Cell lines (Cell_ID,) PubMed(,s) 2 3 19 - - 32 - 8 25 - - 33 - 34 - BE184465 PACS2 14 105376837 105376840 105383663 6823 MAP3K12 12 53487999 53488002 53496216 8214 GM12878 (CVCL_7526) 25497547
2 Homo Sapiens	BE409412 ANNOTATION OF CHIMERA FUSION GenBank ID: BE409412 FASTA Head Gene (1) Alignment: PACS2 | OMIM: 610423 Tail Gene (2) Alignment: PACS2 | OMIM: 610423 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 23241 14 + 105392720 105392778 23 1 protein-coding 23241 14 + 105392620 105395017 3 1 protein-coding 680 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Pacs-1 (PF10254, IPR019381) 414 477 892 2.2e-185 602.500 PACS-1 cytosolic sorting protein Updated: 2019-02-20 Owner: ChiTaRS	PACS2 F8VW41 F8W0B1 Q86VP3 XM_017021108.2	1..59 100.0%	+ 14	PACS2 F8VW41 F8W0B1 Q86VP3 XM_017021108.2	60..674 100.0%	+ 14	1 0 0	exon-exon	3HiC Hi-C contacts of chimeric junction Fusion Gene1 chromo- some1 junction start1 junction end1 Hi-C point1 Δ1 Gene2 chromo- some2 junction start2 junction end2 Hi-C point2 Δ2 Cell lines (Cell_ID,) PubMed(,s) 2 3 19 - - 32 - 8 25 - - 33 - 34 - BE409412 PACS2 14 105392777 105392778 105383663 9114 PACS2 14 105392620 105392621 105383663 8957 GM12878 (CVCL_7526) 25497547 BE409412 PACS2 14 105392777 105392778 105393663 885 PACS2 14 105392620 105392621 105383663 8957 GM12878 (CVCL_7526) 25497547 BE409412 PACS2 14 105392777 105392778 105393663 885 PACS2 14 105392620 105392621 105393663 1042 GM12878 (CVCL_7526) 25497547
3 Homo Sapiens	BM193578 ANNOTATION OF CHIMERA FUSION GenBank ID: BM193578 FASTA Head Gene (1) Alignment: RNGTT | OMIM: 603512 Tail Gene (2) Alignment: PACS2 | OMIM: 610423 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 8732 6 - 88876095 88876376 0 0 oncogene, protein-coding 23241 14 - 105394881 105395206 1 1 protein-coding 343 hg38 Updated: 2019-03-03 Owner: ChiTaRS	RNGTT O60942 XR_001743703.2	1..26 100.0%	- 6	PACS2 F8VW41 F8W0B1 Q86VP3 XM_017021107.2	18..343 98.8%	- 14	1 0 0	intron-exon
4 Homo Sapiens	AI803594 ANNOTATION OF CHIMERA FUSION GenBank ID: AI803594 FASTA Head Gene (1) Alignment: PACS2 | OMIM: 610423 Tail Gene (2) Alignment: ADGRA2 | OMIM: 606823 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 23241 14 - 105394981 105395213 25 1 protein-coding 25960 8 + 37843655 37843726 1 1 protein-coding 328 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Pacs-1 (PF10254, IPR019381) 414 535 958 2.1e-203 661.900 PACS-1 cytosolic sorting protein Updated: 2019-02-20 Owner: ChiTaRS	PACS2 F8VW41 F8W0B1 Q86VP3 XM_017021108.2	31..263 97.5%	- 14	ADGRA2 A0A172Q385 D3DSW5 H7C1L1 Q6YN44 Q96PE1 NM_032777.9	257..328 100.0%	+ 8	1 0 0	exon-exon
5 Homo Sapiens	DA405826 ANNOTATION OF CHIMERA FUSION GenBank ID: DA405826 FASTA Head Gene (1) Alignment: PACS2 | OMIM: 610423 Tail Gene (2) Alignment: APLP2 | OMIM: 104776 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 23241 14 - 105374818 105374923 8 0 protein-coding 334 11 + 130120704 130122459 15 1 protein-coding 571 hg38 Updated: 2019-02-21 Owner: ChiTaRS	PACS2 F8VW41 F8W0B1 Q86VP3 XM_017021108.2	1..106 100.0%	- 14	APLP2 A0A024R3N3 E9PK76 E9PPD0 E9PQS3 E9PSC7 L8E7K0 Q06481 Q9UED0 NM_001328686.1	105..571 100.0%	+ 11	1 0 0	intron-exon

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