Result for the search of Gene Name/NCBI ID(s): 'PABPC1'

Total of fusion sequences: 60 (from 1493742 parsed EST/mRNAs. Last update 2019-12-05 16:32:10)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
51 Homo Sapiens	AW020442 ANNOTATION OF CHIMERA FUSION GenBank ID: AW020442 FASTA Head Gene (1) Alignment: PABPC1 | OMIM: 604679 Tail Gene (2) Alignment: C8orf44-SGK3 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 26986 8 - 100702916 100703239 1 1 oncogene, protein-coding 100533105 8 - 66705719 66706046 16 0 protein-coding 365 hg38 Updated: 2019-02-01 Owner: ChiTaRS	PABPC1 A0A024R9C1 A0A024R9E2 A0A087WTT1 E5RFD8 E5RGC4 E5RGH3 E5RH24 E5RHG7 E5RJB9 E5RJM8 E7EQV3 E7ERJ7 H0YAP2 H0YAR2 H0YAS6 H0YAS7 H0YAW6 H0YB75 H0YB86 H0YBN4 H0YC10 P11940 XM_005250861.3	6..329 100.0%	- 8	C8orf44-SGK3 NM_001204173.1	85..365 97.5%	- 8	1 0 0	exon-intron
52 Homo Sapiens	AA894515 ANNOTATION OF CHIMERA FUSION GenBank ID: AA894515 FASTA Head Gene (1) Alignment: SLC9B1 | OMIM: 611527 Tail Gene (2) Alignment: PABPC1 | OMIM: 604679 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 150159 4 - 102898504 102898697 0 0 protein-coding 26986 8 + 100702916 100703119 1 1 oncogene, protein-coding 227 hg38 Updated: 2019-04-14 Owner: ChiTaRS	SLC9B1 D6RA80 D6RFK4 D6RGI9 D6RHJ0 H0Y9Z0 Q4ZJI4 XM_006714093.3	6..197 95.7%	- 4	PABPC1 A0A024R9C1 A0A024R9E2 A0A087WTT1 E5RFD8 E5RGC4 E5RGH3 E5RH24 E5RHG7 E5RJB9 E5RJM8 E7EQV3 E7ERJ7 H0YAP2 H0YAR2 H0YAS6 H0YAS7 H0YAW6 H0YB75 H0YB86 H0YBN4 H0YC10 P11940 NM_002568.3	24..227 100.0%	+ 8	1 0 0	intron-exon
53 Homo Sapiens	BI495683 ANNOTATION OF CHIMERA FUSION GenBank ID: BI495683 FASTA Head Gene (1) Alignment: PABPC1 | OMIM: 604679 Tail Gene (2) Alignment: FBN3 | OMIM: 608529 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 26986 8 - 100702916 100704340 2 1 oncogene, protein-coding 84467 19 + 8104162 8104184 39 0 protein-coding 513 hg38 Updated: 2019-01-31 Owner: ChiTaRS	PABPC1 A0A024R9C1 A0A024R9E2 A0A087WTT1 E5RFD8 E5RGC4 E5RGH3 E5RH24 E5RHG7 E5RJB9 E5RJM8 E7EQV3 E7ERJ7 H0YAP2 H0YAR2 H0YAS6 H0YAS7 H0YAW6 H0YB75 H0YB86 H0YBN4 H0YC10 P11940 XM_005250861.3	8..494 100.0%	- 8	FBN3 A0A494C0D8 A8KAY2 M0QXL8 M0R2Q5 Q75N90 Q86YS9 XM_017027379.1	491..513 100.0%	+ 19	1 0 0	exon-intron
54 Homo Sapiens	N75867 ANNOTATION OF CHIMERA FUSION GenBank ID: N75867 FASTA Head Gene (1) Alignment: PABPC1 | OMIM: 604679 Tail Gene (2) Alignment: EDIL3 | OMIM: 606018 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 26986 8 - 100702916 100703217 1 1 oncogene, protein-coding 10085 5 - 83983743 83983766 9 0 protein-coding 320 hg38 Updated: 2019-02-08 Owner: ChiTaRS	PABPC1 A0A024R9C1 A0A024R9E2 A0A087WTT1 E5RFD8 E5RGC4 E5RGH3 E5RH24 E5RHG7 E5RJB9 E5RJM8 E7EQV3 E7ERJ7 H0YAP2 H0YAR2 H0YAS6 H0YAS7 H0YAW6 H0YB75 H0YB86 H0YBN4 H0YC10 P11940 XM_005250861.3	1..302 100.0%	- 8	EDIL3 O43854 NM_005711.4	296..319 100.0%	- 5	1 0 0	exon-intron
55 Homo Sapiens	AA535481 ANNOTATION OF CHIMERA FUSION GenBank ID: AA535481 FASTA Head Gene (1) Alignment: PABPC1 | OMIM: 604679 Tail Gene (2) Alignment: SETD2 | OMIM: 612778 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 26986 8 - 100702917 100703214 1 1 oncogene, protein-coding 29072 3 + 47045519 47045978 0 0 oncogene, tumor suppressor 383 hg38 Updated: 2019-04-14 Owner: ChiTaRS	PABPC1 A0A024R9C1 A0A024R9E2 A0A087WTT1 E5RFD8 E5RGC4 E5RGH3 E5RH24 E5RHG7 E5RJB9 E5RJM8 E7EQV3 E7ERJ7 H0YAP2 H0YAR2 H0YAS6 H0YAS7 H0YAW6 H0YB75 H0YB86 H0YBN4 H0YC10 P11940 NM_002568.3	9..306 100.0%	- 8	SETD2 A0A1W2PPX9 C9JG86 H7BXT4 H7BZ93 H7C3H4 Q9BYW2 XR_002959512.1	306..346 97.6%	+ 3	1 0 0	exon-intron
56 Homo Sapiens	BI492138 ANNOTATION OF CHIMERA FUSION GenBank ID: BI492138 FASTA Head Gene (1) Alignment: EPC1 | OMIM: 610999 Tail Gene (2) Alignment: PABPC1 | OMIM: 604679 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 80314 10 + 32284569 32284589 5 0 protein-coding 26986 8 + 100702917 100703207 15 1 oncogene, protein-coding 309 hg38 Updated: 2019-02-17 Owner: ChiTaRS	EPC1 Q9H2F5 XM_006717510.2	1..21 100.0%	+ 10	PABPC1 A0A024R9C1 A0A024R9E2 A0A087WTT1 E5RFD8 E5RGC4 E5RGH3 E5RH24 E5RHG7 E5RJB9 E5RJM8 E7EQV3 E7ERJ7 H0YAP2 H0YAR2 H0YAS6 H0YAS7 H0YAW6 H0YB75 H0YB86 H0YBN4 H0YC10 P11940 XM_005250861.3	12..302 100.0%	+ 8	1 0 0	intron-exon
57 Homo Sapiens	CV324685 ANNOTATION OF CHIMERA FUSION GenBank ID: CV324685 FASTA Head Gene (1) Alignment: CTNND1 | OMIM: 601045 Tail Gene (2) Alignment: PABPC1 | OMIM: 604679 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1500 11 + 57765959 57766080 0 0 oncogene, tumor suppressor 26986 8 - 100713246 100713538 0 0 oncogene, protein-coding 420 hg38 Updated: 2019-04-10 Owner: ChiTaRS	CTNND1 A0A024R4Y7 A0A024R4Z0 C9JZR2 E9PKL1 E9PKY0 E9PRE2 H0YC95 O60716 Q96FS1 NM_001085458.1	15..136 95.1%	+ 11	PABPC1 A0A024R9C1 A0A024R9E2 A0A087WTT1 E5RFD8 E5RGC4 E5RGH3 E5RH24 E5RHG7 E5RJB9 E5RJM8 E7EQV3 E7ERJ7 H0YAP2 H0YAR2 H0YAS6 H0YAS7 H0YAW6 H0YB75 H0YB86 H0YBN4 H0YC10 P11940 NM_002568.3	127..420 98.7%	- 8	1 0 0	intron-intron
58 Homo Sapiens	AW020548 ANNOTATION OF CHIMERA FUSION GenBank ID: AW020548 FASTA Head Gene (1) Alignment: PABPC1 | OMIM: 604679 Tail Gene (2) Alignment: TPM4 | OMIM: 600317 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 26986 8 - 100702916 100703220 1 1 oncogene, protein-coding 7171 19 - 16096937 16096972 1 0 oncogene 362 hg38 Updated: 2019-02-07 Owner: ChiTaRS	PABPC1 A0A024R9C1 A0A024R9E2 A0A087WTT1 E5RFD8 E5RGC4 E5RGH3 E5RH24 E5RHG7 E5RJB9 E5RJM8 E7EQV3 E7ERJ7 H0YAP2 H0YAR2 H0YAS6 H0YAS7 H0YAW6 H0YB75 H0YB86 H0YBN4 H0YC10 P11940 XM_005250861.3	8..312 100.0%	- 8	TPM4 A0A2R8Y5V9 A0A2R8YE05 A0A2R8YEU4 A0A2R8YGX3 A0A2R8YH90 A0A2R8YHD2 K7ELJ3 K7ELP0 K7EMU5 K7ENT6 K7EP68 K7EPB9 K7EPV9 K7ERG3 P67936 V9HW56 XM_011528231.2	311..346 100.0%	- 19	1 0 0	exon-intron
59 Homo Sapiens	DW419798 ANNOTATION OF CHIMERA FUSION GenBank ID: DW419798 FASTA Head Gene (1) Alignment: RFX3 | OMIM: 601337 Tail Gene (2) Alignment: PABPC1 | OMIM: 604679 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 5991 9 - 3524905 3524977 20 0 protein-coding 26986 8 - 100706653 100706947 11 1 oncogene, protein-coding 302 hg38 Updated: 2019-02-21 Owner: ChiTaRS	RFX3 A9Z1Z2 F6UGA0 F6USP3 F6UV76 F6XM74 H0Y790 H0Y7W5 H0Y7Z4 P48380 XM_011518001.1	18..90 100.0%	- 9	PABPC1 A0A024R9C1 A0A024R9E2 A0A087WTT1 E5RFD8 E5RGC4 E5RGH3 E5RH24 E5RHG7 E5RJB9 E5RJM8 E7EQV3 E7ERJ7 H0YAP2 H0YAR2 H0YAS6 H0YAS7 H0YAW6 H0YB75 H0YB86 H0YBN4 H0YC10 P11940 XM_005250861.3	89..302 100.0%	- 8	1 0 0	intron-exon
60 Homo Sapiens	BG034038 ANNOTATION OF CHIMERA FUSION GenBank ID: BG034038 FASTA Head Gene (1) Alignment: PABPC1 | OMIM: 604679 Tail Gene (2) Alignment: BAIAP2L2 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 26986 8 - 100721667 100722072 1 1 oncogene, protein-coding 80115 22 - 38089250 38089282 0 0 protein-coding 683 hg38 Updated: 2019-06-06 Owner: ChiTaRS	PABPC1 A0A024R9C1 A0A024R9E2 A0A087WTT1 E5RFD8 E5RGC4 E5RGH3 E5RH24 E5RHG7 E5RJB9 E5RJM8 E7EQV3 E7ERJ7 H0YAP2 H0YAR2 H0YAS6 H0YAS7 H0YAW6 H0YB75 H0YB86 H0YBN4 H0YC10 P11940 NM_002568.3	1..408 98.3%	- 8	BAIAP2L2 B0QYF0 Q6UXY1 Q9H661 XM_011530379.3	409..440 96.7%	- 22	1 0 0	exon-intron

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