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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'PABPC1'

Total of fusion sequences: 63 (from 3,568,812 parsed EST/mRNAs. Last update 2020-07-14 10:36:55)

Organism Fusion:
Graphical View,
Annotation,
PPI network
Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y)
Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences
Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript
Start1..End1
Ident1%
Strand1
Chrom1
Name(s)2,
transcript
Start2..End2
Ident2%
Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
11
Homo Sapiens

XM_005250861.3
1..521
100.0%
-
8
PABPC1P1 416..529
95.6%
+
4
0
683
3227
exon-exon
12
Homo Sapiens

NM_002568.3
8..544
99.9%
-
8
PABPC1P1 75..571
95.0%
+
4
0
683
3227
exon-exon
13
Homo Sapiens

NM_002568.3
8..442
100.0%
-
8
LOC105370120
XR_941762.2
39..461
95.3%
+
13
0
358
3369
exon-intron
14
Homo Sapiens

XR_001741185.1
16..279
95.3%
-
4

NM_002568.3
26..291
98.2%
-
8
3
307
153
intron-exon
15
Homo Sapiens

NM_002568.3
1..560
99.9%
-
8

XR_001741185.1
29..568
95.4%
-
4
3
307
153
exon-intron
16
Homo Sapiens

XM_005250861.3
1..171
100.0%
-
8
PABPC1P4 170..245
98.7%
-
12
0
247
2303
exon-exon
17
Homo Sapiens
PABPC1P4 8..539
96.1%
+
12

NM_002568.3
23..710
98.3%
-
8
0
247
2303
exon-exon
18
Homo Sapiens

NM_183353.2
1..46
95.7%
+
X

NM_002568.3
44..80
100.0%
+
8
4
207
308
exon-exon
19
Homo Sapiens

XM_005250861.3
8..331
100.0%
-
8

NM_001282175.1
324..347
100.0%
+
19
3
164
0
exon-intron
20
Homo Sapiens
LOC105370120
XR_941762.2
1..547
95.0%
+
13

NM_002568.3
19..552
98.1%
-
8
2
154
143
intron-exon

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