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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'PABPC1'

Total of fusion sequences: 66 (from 1493742 parsed EST/mRNAs. Last update 2019-12-11 12:04:16)

Organism Fusion:
Graphical View,
Annotation,
PPI network
Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y)
Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences
Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript
Start1..End1
Ident1%
Strand1
Chrom1
Name(s)2,
transcript
Start2..End2
Ident2%
Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
11
Homo Sapiens

NM_002568.3
8..544
99.9%
-
8
PABPC1P1 75..571
95.0%
+
4
0
683
3227
exon-exon
12
Homo Sapiens

XM_005250861.3
1..521
100.0%
-
8
PABPC1P1 416..529
95.6%
+
4
0
683
3227
exon-exon
13
Homo Sapiens
LOC105370120
XR_941762.2
1..547
95.0%
+
13

NM_002568.3
19..552
98.1%
-
8
0
512
3512
intron-exon
14
Homo Sapiens

NM_002568.3
8..442
100.0%
-
8
LOC105370120
XR_941762.2
39..461
95.3%
+
13
0
440
2841
exon-intron
15
Homo Sapiens
LOC105370120
XR_941762.2
1..439
97.5%
+
13

NM_002568.3
12..484
99.8%
-
8
0
440
2841
intron-exon
16
Homo Sapiens

XM_005250861.3
8..331
100.0%
-
8

NM_001282175.1
324..347
100.0%
+
19
3
164
0
exon-intron
17
Homo Sapiens

NM_001282175.1
1..25
100.0%
-
19

XM_005250861.3
18..328
99.1%
+
8
3
6
0
intron-exon
18
Homo Sapiens

XM_005250861.3
1..200
100.0%
-
8

NM_001282175.1
193..223
100.0%
+
19
3
6
0
exon-intron
19
Homo Sapiens
MIR7705 1..436
99.7%
+
8

XM_005250861.3
437..564
99.7%
+
8
1
0
0
intron-exon
20
Homo Sapiens
MIR7705 1..436
100.0%
+
8

XM_005250861.3
437..554
100.0%
+
8
1
0
0
intron-exon

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