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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search: Gene Name/NCBI ID(s): 'Nlk'

Total of fusion sequences: 10 (from 1,389,894 parsed EST/mRNAs. Last update 2019-07-07)

Organism Fusion:
Graphical View,
Annotation,
PPI network 		Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y) 		Fusion type Hi-C,
RNAseq,
Mass-spec
evidences		 Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript		 Start1..End1
Ident1% 		Strand1
Chrom1 		Name(s)2,
transcript		 Start2..End2
Ident2% 		Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15-1617
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: BF721861 FASTA
Head Gene (1) Alignment: Nlk Tail Gene (2) Alignment: Zfp933 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1809911+786543187865452800protein-coding2427474+14759400714783138130protein-coding 357 mm10
Updated: 2019-06-12
Owner: ChiTaRS
NM_008702.3		1..211
97.2%		+
11
NM_198619.2		65..357
98.7%		+
4		1
0
0		intron-intron
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: DV066218 FASTA
Head Gene (1) Alignment: Gm6851 Tail Gene (2) Alignment: Nlk Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1052472537+4019090440191359111809911-784234927858557550protein-coding 958 mm10
Updated: 2019-06-16
Owner: ChiTaRS
Gm6851
XM_011250928.1		25..482
97.8%		+
7
NM_008702.3		36..549
97.9%		-
11		1
0
0		exon-intron
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: BG808780 FASTA
Head Gene (1) Alignment: Nlk Tail Gene (2) Alignment: D130079A08Rik Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1809911-786961537869661311protein-coding32067114-10443732310443745500 546 mm10
Updated: 2019-06-15
Owner: ChiTaRS
NM_008702.3		1..460
99.6%		-
11		 D130079A08Rik
Q8BNC5
XR_874928.1		426..491
97.3%		-
14		1
0
0		exon-intron
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: CA456041 FASTA
Head Gene (1) Alignment: S100a13 Tail Gene (2) Alignment: Nlk Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
201963+9051496790524580311809911+786740907867414800protein-coding 570 mm10
Updated: 2019-06-12
Owner: ChiTaRS
NM_009113.4		39..512
99.6%		+
3
NM_008702.3		512..567
96.3%		+
11		1
0
0		exon-intron
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: BC046536 FASTA
UniProtKB: Q2TBA3 Mucosa-associated lymphoid tissue lymphoma translocation protein 1 homolog (EC 3.4.22.-) (Paracaspase)
Fusion Gene(s): Malt1
Head Gene (1) Alignment: Malt1 Tail Gene (2) Alignment: Nlk Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
24035418+6547033865478825411809911+784291757857448630protein-coding 2580 mm10
Updated: 2019-06-11
Owner: ChiTaRS
XM_006525937.2		1..2533
99.5%		+
18
NM_008702.3		2084..2580
95.5%		+
11		1
0
0		exon-intron
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: CA527004 FASTA
Head Gene (1) Alignment: Gm31219 Tail Gene (2) Alignment: Nlk Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
10263338413+7627107576271100001809911-786778197869633110protein-coding 600 mm10
Updated: 2019-06-16
Owner: ChiTaRS
Gm31219
Q3UWX4
XR_382664.3		10..35
96.2%		+
13
NM_008702.3		23..600
99.7%		-
11		1
0
0		intron-intron
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: DV047373 FASTA
Head Gene (1) Alignment: Tmem42 Tail Gene (2) Alignment: Nlk Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
660799+123022259123023484211809911+786693287866967800protein-coding 933 mm10
Updated: 2019-06-16
Owner: ChiTaRS
XM_006512206.3		19..713
99.6%		+
9
NM_008702.3		605..876
97.3%		+
11		1
0
0		exon-intron
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: BC027782 FASTA
Head Gene (1) Alignment: Dnajb5 Tail Gene (2) Alignment: Nlk Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
563234+4295035142958730411809911+786741027867414900protein-coding 5091 mm10
Updated: 2019-06-05
Owner: ChiTaRS
XM_006538109.3		1..5049
99.7%		+
4
NM_008702.3		5025..5067
97.3%		+
11		1
0
0		exon-intron
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: BU921980 FASTA
Head Gene (1) Alignment: Mafb Tail Gene (2) Alignment: Nlk Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
166582-16036624816036650311protein-coding1809911-786266637869614321protein-coding 600 mm10
Updated: 2019-05-28
Owner: ChiTaRS
NM_010658.3		1..253
99.7%		-
2
NM_008702.3		221..599
99.5%		-
11		1
0
0		exon-exon
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: CK346048 FASTA
Head Gene (1) Alignment: Nlk Tail Gene (2) Alignment: Rnf152 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1809911+786649557866502500protein-coding3203111+10528200610528249711protein-coding 567 mm10
Updated: 2019-05-28
Owner: ChiTaRS
NM_008702.3		12..82
98.6%		+
11		 Rnf152
Q8BG47
XM_006529699.3		76..567
100.0%		+
1		1
0
0		intron-exon

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