Result for the search of Gene Name/NCBI ID(s): 'Ndfip1'

Total of fusion sequences: 8 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Mus musculus	CF582511 ANNOTATION OF CHIMERA FUSION GenBank ID: CF582511 FASTA Head Gene (1) Alignment: Ndfip1 Tail Gene (2) Alignment: Oxr1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 65113 18 + 38428732 38428765 0 0 170719 15 - 41860183 41861048 1 1 protein-coding 917 mm10 Updated: 2019-06-12 Owner: ChiTaRS	Ndfip1 A0A494B9F5 A0A494BAA4 A0A494BAK0 Q8R0W6 NM_022996.1	1..34 100.0%	+ 18	Oxr1 A0A2R8VHF5 A0A2R8VHS5 A0A2R8VHT3 A0A2R8VI09 A0A2R8VKF8 A0A2R8W6J0 A0A2R8W6N3 B1H3M0 D3YXF5 E9Q0A7 Q4KMM3 Q8C715 XR_001781502.1	27..905 96.6%	- 15	1 0 0	intron-exon
2 Mus musculus	BG920350 ANNOTATION OF CHIMERA FUSION GenBank ID: BG920350 FASTA Head Gene (1) Alignment: Lyz2 Tail Gene (2) Alignment: Ndfip1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 17105 10 - 117277333 117277884 1 1 65113 18 - 38428732 38428766 0 0 578 mm10 Updated: 2019-06-05 Owner: ChiTaRS	Lyz2 A0A077S2U6 P08905 Q8R4V5 NM_017372.3	1..552 100.0%	- 10	Ndfip1 A0A494B9F5 A0A494BAA4 A0A494BAK0 Q8R0W6 NM_022996.1	546..578 100.0%	- 18	1 0 0	exon-intron
3 Mus musculus	DV061574 ANNOTATION OF CHIMERA FUSION GenBank ID: DV061574 FASTA Head Gene (1) Alignment: Ndfip1 Tail Gene (2) Alignment: Gm33228 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 65113 18 + 38464685 38465185 1 1 102636049 18 - 26028795 26028823 0 0 930 mm10 Updated: 2019-06-16 Owner: ChiTaRS	Ndfip1 A0A494B9F5 A0A494BAA4 A0A494BAK0 Q8R0W6 XM_006526149.1	43..543 99.9%	+ 18	Gm33228 XR_877243.1	543..571 100.0%	- 18	1 0 0	exon-intron
4 Mus musculus	CK031698 ANNOTATION OF CHIMERA FUSION GenBank ID: CK031698 FASTA Head Gene (1) Alignment: Sin3b Tail Gene (2) Alignment: Ndfip1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 20467 8 + 72757488 72758200 1 1 protein-coding 65113 18 - 38428735 38428764 0 0 811 mm10 Updated: 2019-06-11 Owner: ChiTaRS	Sin3b A0A1D5RM25 Q3TN09 Q3TXW9 Q3U592 Q62141 Q80WX0 NM_009188.4	1..711 100.0%	+ 8	Ndfip1 A0A494B9F5 A0A494BAA4 A0A494BAK0 Q8R0W6 NM_022996.1	708..737 100.0%	- 18	1 0 0	exon-intron
5 Mus musculus	DV068973 ANNOTATION OF CHIMERA FUSION GenBank ID: DV068973 FASTA Head Gene (1) Alignment: Ndfip1 Tail Gene (2) Alignment: Arhgap26 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 65113 18 + 38456422 38456735 0 0 71302 18 + 38710164 38710188 0 0 protein-coding 980 mm10 Updated: 2019-06-16 Owner: ChiTaRS	Ndfip1 A0A494B9F5 A0A494BAA4 A0A494BAK0 Q8R0W6 NM_022996.1	74..395 98.6%	+ 18	Arhgap26 A0A494B9M9 B9EJ96 D3Z1X5 E9QAQ3 F6Q7M1 F6T836 F6XTB7 F7D661 Q3U860 Q6ZQ82 Q8BIY6 Q8C1Q3 Q9D0J3 XM_017317986.1	396..420 98.6%	+ 18	1 0 0	intron-intron
6 Mus musculus	DV048639 ANNOTATION OF CHIMERA FUSION GenBank ID: DV048639 FASTA Head Gene (1) Alignment: Ube2k Tail Gene (2) Alignment: Ndfip1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 53323 5 + 65591027 65591457 0 0 protein-coding 65113 18 + 38378489 38418904 1 0 952 mm10 Updated: 2019-06-16 Owner: ChiTaRS	Ube2k A0A0J9YU07 A0A0J9YUI1 A0A0J9YUR9 D3Z4U3 F8WIC2 P61087 Q3TL77 Q3V3R8 Q6ZWQ6 NM_016786.4	20..450 99.4%	+ 5	Ndfip1 A0A494B9F5 A0A494BAA4 A0A494BAK0 Q8R0W6 ENSMUST00000236052	301..657 95.2%	+ 18	1 0 0	intron-intron
7 Mus musculus	AI463214 ANNOTATION OF CHIMERA FUSION GenBank ID: AI463214 FASTA Head Gene (1) Alignment: Adam5 Tail Gene (2) Alignment: Ndfip1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 11499 8 - 24787763 24787782 0 0 65113 18 - 38464924 38465185 1 1 292 mm10 Updated: 2019-06-16 Owner: ChiTaRS	Adam5 F6S1B5 Q3TTE0 Q78E93 NM_001272058.1	14..33 100.0%	- 8	Ndfip1 A0A494B9F5 A0A494BAA4 A0A494BAK0 Q8R0W6 XM_006526149.1	31..292 98.1%	- 18	1 0 0	intron-exon
8 Mus musculus	BF453323 ANNOTATION OF CHIMERA FUSION GenBank ID: BF453323 FASTA Head Gene (1) Alignment: Ndfip1 Tail Gene (2) Alignment: Cep112 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 65113 18 + 38464824 38465185 1 1 76380 11 - 108528784 108528808 0 0 protein-coding 383 mm10 Updated: 2019-06-14 Owner: ChiTaRS	Ndfip1 A0A494B9F5 A0A494BAA4 A0A494BAK0 Q8R0W6 XM_006526149.1	1..362 99.5%	+ 18	Cep112 A2ABQ5 I7HJR4 I7HLS4 I7HPW3 J3JS86 Q3TV83 Q5PR68 Q9DAQ8 S4R188 S4R1I4 Z4YKK6 NM_029606.3	358..382 100.0%	- 11	1 0 0	exon-intron

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