Result for the search of Gene Name/NCBI ID(s): 'NXF1'

Total of fusion sequences: 10 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	SplGraphs DB136765 ANNOTATION OF CHIMERA FUSION GenBank ID: DB136765 FASTA Head Gene (1) Alignment: NFKBID Tail Gene (2) Alignment: NXF1 | OMIM: 602647 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 84807 19 - 35897775 35899740 12 1 protein-coding 10482 11 - 62799890 62800129 10 1 protein-coding 516 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to NTF2 (PF02136, IPR002075) 120 726 876 9.5e-32 96.300 Nuclear transport factor 2 (NTF2) domain TAP_C (PF03943, IPR005637, SM00804) 49 909 957 5.7e-29 85.800 TAP C-terminal domain Updated: 2019-02-21 Owner: ChiTaRS	NFKBID A0A286YF31 K7EKM2 K7ENW9 Q8NI38 XM_011527420.2	1..281 100.0%	- 19	NXF1 A0A024R5A9 B4E227 E9PIN3 E9PLA7 E9PMV7 E9PQA4 H0YDU0 Q9UBU9 NM_001081491.1	277..516 100.0%	- 11	1 0 0	exon-exon
2 Homo Sapiens	ChimerDB AW197217 ANNOTATION OF CHIMERA FUSION GenBank ID: AW197217 FASTA Head Gene (1) Alignment: NXF1 | OMIM: 602647 Tail Gene (2) Alignment: ZNF609 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 10482 11 + 62792130 62792387 1 1 protein-coding 23060 15 - 64675918 64676173 6 1 protein-coding 517 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to NTF2 (PF02136, IPR002075) 120 1024 1174 2.1e-31 95.200 Nuclear transport factor 2 (NTF2) domain TAP_C (PF03943, IPR005637, SM00804) 49 1207 1255 1.1e-28 84.900 TAP C-terminal domain Updated: 2019-02-20 Owner: ChiTaRS	NXF1 A0A024R5A9 B4E227 E9PIN3 E9PLA7 E9PMV7 E9PQA4 H0YDU0 Q9UBU9 NM_006362.4	7..264 100.0%	+ 11	ZNF609 A5PKW6 E7ERY8 L8ECF6 O15014 XM_017022021.1	263..517 97.7%	- 15	1 0 0	exon-exon
3 Homo Sapiens	ChimerDB DA922033 ANNOTATION OF CHIMERA FUSION GenBank ID: DA922033 FASTA Head Gene (1) Alignment: RNA45SN1 Tail Gene (2) Alignment: NXF1 | OMIM: 602647 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 106631777 21 + 8436955 8437010 1 1 rRNA 10482 11 - 62802210 62805442 4 1 protein-coding 562 hg38 Updated: 2019-02-02 Owner: ChiTaRS	RNA45SN1 NR_145819.1	1..56 100.0%	+ 21	NXF1 A0A024R5A9 B4E227 E9PIN3 E9PLA7 E9PMV7 E9PQA4 H0YDU0 Q9UBU9 NM_006362.4	57..562 100.0%	- 11	1 0 0	exon-exon
4 Homo Sapiens	BI492932 ANNOTATION OF CHIMERA FUSION GenBank ID: BI492932 FASTA Head Gene (1) Alignment: FAM168A | OMIM: 616316 Tail Gene (2) Alignment: NXF1 | OMIM: 602647 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 23201 11 - 73410080 73410118 3 0 protein-coding 10482 11 + 62792171 62792485 21 1 protein-coding 338 hg38 Updated: 2019-02-17 Owner: ChiTaRS	FAM168A Q92567 NM_001286050.1	1..28 100.0%	- 11	NXF1 A0A024R5A9 B4E227 E9PIN3 E9PLA7 E9PMV7 E9PQA4 H0YDU0 Q9UBU9 NM_006362.4	17..331 100.0%	+ 11	1 0 0	intron-exon
5 Homo Sapiens	AW021972 ANNOTATION OF CHIMERA FUSION GenBank ID: AW021972 FASTA Head Gene (1) Alignment: NXF1 | OMIM: 602647 Tail Gene (2) Alignment: FAM168A | OMIM: 616316 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 10482 11 - 62792171 62792485 1 1 protein-coding 23201 11 + 73410080 73410119 6 0 protein-coding 339 hg38 Updated: 2019-02-07 Owner: ChiTaRS	NXF1 A0A024R5A9 B4E227 E9PIN3 E9PLA7 E9PMV7 E9PQA4 H0YDU0 Q9UBU9 NM_006362.4	8..322 100.0%	- 11	FAM168A Q92567 NM_001286050.1	311..339 100.0%	+ 11	1 0 0	exon-intron
6 Homo Sapiens	BE504888 ANNOTATION OF CHIMERA FUSION GenBank ID: BE504888 FASTA Head Gene (1) Alignment: NXF1 | OMIM: 602647 Tail Gene (2) Alignment: LOC400541 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 10482 11 + 62792125 62792480 1 1 protein-coding 400541 16 - 70158566 70158724 2 0 ncRNA 514 hg38 Updated: 2019-02-17 Owner: ChiTaRS	NXF1 A0A024R5A9 B4E227 E9PIN3 E9PLA7 E9PMV7 E9PQA4 H0YDU0 Q9UBU9 NM_006362.4	5..360 100.0%	+ 11	LOC400541 NR_126007.1	356..514 100.0%	- 16	2 0 50	exon-intron
7 Homo Sapiens	BE551533 ANNOTATION OF CHIMERA FUSION GenBank ID: BE551533 FASTA Head Gene (1) Alignment: NXF1 | OMIM: 602647 Tail Gene (2) Alignment: LOC400541 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 10482 11 + 62792125 62792480 1 1 protein-coding 400541 16 - 70158516 70158724 2 0 ncRNA 561 hg38 Updated: 2019-02-17 Owner: ChiTaRS	NXF1 A0A024R5A9 B4E227 E9PIN3 E9PLA7 E9PMV7 E9PQA4 H0YDU0 Q9UBU9 NM_006362.4	5..359 99.8%	+ 11	LOC400541 NR_126007.1	355..561 99.6%	- 16	2 0 50	exon-intron
8 Homo Sapiens	BM145677 ANNOTATION OF CHIMERA FUSION GenBank ID: BM145677 FASTA Head Gene (1) Alignment: RPS6 | OMIM: 180460 Tail Gene (2) Alignment: NXF1 | OMIM: 602647 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 6194 9 + 19377393 19377417 0 0 protein-coding 10482 11 + 62792173 62792473 1 1 protein-coding 324 hg38 Updated: 2019-03-03 Owner: ChiTaRS	RPS6 A2A3R5 A2A3R6 A2A3R7 D3DRJ5 P62753 Q96DV6 NM_001010.2	1..25 100.0%	+ 9	NXF1 A0A024R5A9 B4E227 E9PIN3 E9PLA7 E9PMV7 E9PQA4 H0YDU0 Q9UBU9 NM_006362.4	18..319 96.1%	+ 11	1 0 0	intron-exon
9 Homo Sapiens	AA523143 ANNOTATION OF CHIMERA FUSION GenBank ID: AA523143 FASTA Head Gene (1) Alignment: NXF1 | OMIM: 602647 Tail Gene (2) Alignment: ARID5B | OMIM: 608538 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 10482 11 - 62792120 62792517 1 0 protein-coding 84159 10 + 62012006 62012028 0 0 oncogene, protein-coding 459 hg38 Updated: 2019-04-14 Owner: ChiTaRS	NXF1 A0A024R5A9 B4E227 E9PIN3 E9PLA7 E9PMV7 E9PQA4 H0YDU0 Q9UBU9 NM_006362.4	7..402 99.3%	- 11	ARID5B A0A0B6XJY6 A0A2R8Y5F2 Q14865 NM_032199.2	403..425 100.0%	+ 10	1 0 0	intron-intron
10 Homo Sapiens	DB214465 ANNOTATION OF CHIMERA FUSION GenBank ID: DB214465 FASTA Head Gene (1) Alignment: IST1 | OMIM: 616434 Tail Gene (2) Alignment: NXF1 | OMIM: 602647 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 9798 16 + 71895532 71895589 1 1 protein-coding 10482 11 - 62803449 62803981 3 1 protein-coding 371 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Tap-RNA_bind (PF09162, IPR015245) 83 220 302 4.2e-43 131.500 Tap, RNA-binding LRR_8 (PF13855, IPR001611) 61 369 431 1.1e-08 21.000 Leucine rich repeat NTF2 (PF02136, IPR002075) 120 490 640 5.1e-32 97.200 Nuclear transport factor 2 (NTF2) domain TAP_C (PF03943, IPR005637, SM00804) 49 673 721 3.5e-29 86.500 TAP C-terminal domain Updated: 2019-02-21 Owner: ChiTaRS	IST1 E9PF00 F5GXM3 H3BMU1 H3BPP6 H3BQ38 H3BQF7 H3BRE2 H3BUI0 J3KR23 J3QQP8 P53990 NM_014761.3	3..60 100.0%	+ 16	NXF1 A0A024R5A9 B4E227 E9PIN3 E9PLA7 E9PMV7 E9PQA4 H0YDU0 Q9UBU9 NM_006362.4	58..371 100.0%	- 11	1 0 0	exon-exon

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