Result for the search of Gene Name/NCBI ID(s): 'NR4A1'

Total of fusion sequences: 19 (from 3,500,620 parsed EST/mRNAs. Last update 2020-05-11 17:25:38)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	SplGraphs BF915953 ANNOTATION OF CHIMERA FUSION GenBank ID: BF915953 FASTA Head Gene (1) Alignment: NR4A1 | OMIM: 139139 Tail Gene (2) Alignment: IFRD2 | OMIM: 602725 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 3164 12 + 52057097 52057376 8 1 tumor suppressor 7866 3 - 50288720 50288834 9 0 oncogene 313 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to zf-C4 (PF00105, IPR001628, SM00399) 70 319 388 6e-35 105.900 Zinc finger, C4 type (two domains) Hormone_recep (PF00104, IPR000536, SM00430) 208 449 527 4e-15 42.100 Ligand-binding domain of nuclear hormone receptor Updated: 2019-02-20 Owner: ChiTaRS	NR4A1 A0A024R126 F5GXF0 F8VVX9 H3BPN8 H3BQG5 H3BSB9 H3BSM8 H3BT85 P22736 XM_006719364.4	14..201 100.0%	+ 12	IFRD2 A0A0R4J2F6 F8WEI6 H7C2Z4 H7C444 Q12894 NM_006764.4	198..312 99.2%	- 3	1 0 0	exon-intron
2 Homo Sapiens	SplGraphs BG928171 ANNOTATION OF CHIMERA FUSION GenBank ID: BG928171 FASTA Head Gene (1) Alignment: PABPC1 | OMIM: 604679 Tail Gene (2) Alignment: NR4A1 | OMIM: 139139 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 26986 8 - 100721686 100721831 15 1 oncogene, protein-coding 3164 12 + 52057463 52059057 2 1 tumor suppressor 628 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Hormone_recep (PF00104, IPR000536, SM00430) 208 383 471 5.4e-17 48.200 Ligand-binding domain of nuclear hormone receptor Updated: 2019-02-21 Owner: ChiTaRS	PABPC1 A0A024R9C1 A0A024R9E2 A0A087WTT1 E5RFD8 E5RGC4 E5RGH3 E5RH24 E5RHG7 E5RJB9 E5RJM8 E7EQV3 E7ERJ7 H0YAP2 H0YAR2 H0YAS6 H0YAS7 H0YAW6 H0YB75 H0YB86 H0YBN4 H0YC10 P11940 XM_005250861.3	61..207 97.9%	- 8	NR4A1 A0A024R126 F5GXF0 F8VVX9 H3BPN8 H3BQG5 H3BSB9 H3BSM8 H3BT85 P22736 XM_006719364.4	190..628 99.6%	+ 12	1 0 0	exon-exon
3 Homo Sapiens	SplGraphs AW952990 ANNOTATION OF CHIMERA FUSION GenBank ID: AW952990 FASTA Head Gene (1) Alignment: PALM2-AKAP2 Tail Gene (2) Alignment: NR4A1 | OMIM: 139139 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 445815 9 + 110137761 110137833 8 1 protein-coding 3164 12 + 52055864 52055974 5 0 tumor suppressor 317 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to zf-C4 (PF00105, IPR001628, SM00399) 70 668 716 2.6e-17 49.400 Zinc finger, C4 type (two domains) Updated: 2019-02-20 Owner: ChiTaRS	PALM2-AKAP2 B1ALY0 NM_007203.4	1..73 100.0%	+ 9	NR4A1 A0A024R126 F5GXF0 F8VVX9 H3BPN8 H3BQG5 H3BSB9 H3BSM8 H3BT85 P22736 XM_006719364.4	67..177 99.1%	+ 12	1 0 0	exon-intron
4 Homo Sapiens	AA557827 ANNOTATION OF CHIMERA FUSION GenBank ID: AA557827 FASTA Head Gene (1) Alignment: NR4A1 | OMIM: 139139 Tail Gene (2) Alignment: NR4A1 | OMIM: 139139 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 3164 12 + 52059042 52059273 9 1 tumor suppressor 3164 12 - 52058917 52058991 1 1 tumor suppressor 307 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to zf-C4 (PF00105, IPR001628, SM00399) 70 568 601 6.1e-15 41.800 Zinc finger, C4 type (two domains) Updated: 2019-02-20 Owner: ChiTaRS	NR4A1 A0A024R126 F5GXF0 F8VVX9 H3BPN8 H3BQG5 H3BSB9 H3BSM8 H3BT85 P22736 XM_006719364.4	9..239 99.6%	+ 12	NR4A1 A0A024R126 F5GXF0 F8VVX9 H3BPN8 H3BQG5 H3BSB9 H3BSM8 H3BT85 P22736 XM_006719364.4	233..307 98.7%	- 12	0 2229 2253	exon-exon
5 Homo Sapiens	AV705223 ANNOTATION OF CHIMERA FUSION GenBank ID: AV705223 FASTA Head Gene (1) Alignment: NR4A1 | OMIM: 139139 Tail Gene (2) Alignment: NR4A1 | OMIM: 139139 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 3164 12 + 52056789 52056880 6 0 tumor suppressor 3164 12 + 52056500 52056762 4 1 tumor suppressor 739 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to zf-C4 (PF00105, IPR001628, SM00399) 70 568 601 5.6e-15 41.900 Zinc finger, C4 type (two domains) Updated: 2019-02-20 Owner: ChiTaRS	NR4A1 A0A024R126 F5GXF0 F8VVX9 H3BPN8 H3BQG5 H3BSB9 H3BSM8 H3BT85 P22736 XM_006719364.4	1..92 100.0%	+ 12	NR4A1 A0A024R126 F5GXF0 F8VVX9 H3BPN8 H3BQG5 H3BSB9 H3BSM8 H3BT85 P22736 XM_006719364.4	93..355 100.0%	+ 12	0 2229 2253	intron-exon
6 Homo Sapiens	AI536076 ANNOTATION OF CHIMERA FUSION GenBank ID: AI536076 FASTA Head Gene (1) Alignment: NR4A1 | OMIM: 139139 Tail Gene (2) Alignment: RFTN2 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 3164 12 + 52059309 52059496 1 1 tumor suppressor 130132 2 + 197646900 197646923 0 0 protein-coding 575 hg38 Updated: 2019-04-14 Owner: ChiTaRS	NR4A1 A0A024R126 F5GXF0 F8VVX9 H3BPN8 H3BQG5 H3BSB9 H3BSM8 H3BT85 P22736 XM_006719364.4	41..228 100.0%	+ 12	RFTN2 C9J6C2 H7BZ31 Q52LD8 XM_011510598.3	228..251 100.0%	+ 2	1 0 0	exon-intron
7 Homo Sapiens	AI535660 ANNOTATION OF CHIMERA FUSION GenBank ID: AI535660 FASTA Head Gene (1) Alignment: NR4A1 | OMIM: 139139 Tail Gene (2) Alignment: RFTN2 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 3164 12 + 52059309 52059496 1 1 tumor suppressor 130132 2 + 197646900 197646923 0 0 protein-coding 575 hg38 Updated: 2019-04-14 Owner: ChiTaRS	NR4A1 A0A024R126 F5GXF0 F8VVX9 H3BPN8 H3BQG5 H3BSB9 H3BSM8 H3BT85 P22736 XM_006719364.4	41..228 100.0%	+ 12	RFTN2 C9J6C2 H7BZ31 Q52LD8 XM_011510598.3	228..251 100.0%	+ 2	1 0 0	exon-intron
8 Homo Sapiens	CV420651 ANNOTATION OF CHIMERA FUSION GenBank ID: CV420651 FASTA Head Gene (1) Alignment: NR4A1 | OMIM: 139139 Tail Gene (2) Alignment: FAM155A Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 3164 12 - 52052583 52052943 1 0 tumor suppressor 728215 13 - 107867132 107867170 1 1 protein-coding 375 hg38 Updated: 2019-04-10 Owner: ChiTaRS	NR4A1 A0A024R126 F5GXF0 F8VVX9 H3BPN8 H3BQG5 H3BSB9 H3BSM8 H3BT85 P22736 XM_006719363.1	9..368 98.7%	- 12	FAM155A B1AL88 XM_011521109.3	339..375 96.5%	- 13	1 0 0	intron-exon
9 Homo Sapiens	BF589249 ANNOTATION OF CHIMERA FUSION GenBank ID: BF589249 FASTA Head Gene (1) Alignment: CTSZ | OMIM: 603169 Tail Gene (2) Alignment: NR4A1 | OMIM: 139139 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1522 20 - 59006470 59007085 2 1 protein-coding 3164 12 + 52059165 52059477 1 1 tumor suppressor 420 hg38 Updated: 2019-03-26 Owner: ChiTaRS	CTSZ Q9UBR2 NM_001336.3	1..116 100.0%	- 20	NR4A1 A0A024R126 F5GXF0 F8VVX9 H3BPN8 H3BQG5 H3BSB9 H3BSM8 H3BT85 P22736 XM_006719364.4	108..420 100.0%	+ 12	1 0 0	exon-exon
10 Homo Sapiens	CD517507 ANNOTATION OF CHIMERA FUSION GenBank ID: CD517507 FASTA Head Gene (1) Alignment: TXNL4B Tail Gene (2) Alignment: NR4A1 | OMIM: 139139 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 54957 16 - 72086210 72086293 1 1 protein-coding 3164 12 + 52052294 52057216 7 0 tumor suppressor 909 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Opy2 (PF09463, IPR018571) 35 554 568 0.007 3.000 Opy2 protein zf-C4 (PF00105, IPR001628, SM00399) 70 874 943 1.3e-34 104.800 Zinc finger, C4 type (two domains) Hormone_recep (PF00104, IPR000536, SM00430) 208 1004 1188 1.7e-35 108.600 Ligand-binding domain of nuclear hormone receptor Updated: 2019-02-21 Owner: ChiTaRS	TXNL4B H3BN11 H3BQ09 H3BUL8 L8E8E2 Q9NX01 NM_001324355.1	26..109 100.0%	- 16	NR4A1 A0A024R126 F5GXF0 F8VVX9 H3BPN8 H3BQG5 H3BSB9 H3BSM8 H3BT85 P22736 NM_002135.4	102..909 99.3%	+ 12	1 0 0	exon-intron

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