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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'NFIC'

Total of fusion sequences: 29 (from 1493742 parsed EST/mRNAs. Last update 2019-12-05 16:32:10)

Organism Fusion:
Graphical View,
Annotation,
PPI network 		Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y) 		Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences		 Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript		 Start1..End1
Ident1% 		Strand1
Chrom1 		Name(s)2,
transcript		 Start2..End2
Ident2% 		Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Homo Sapiens		 ChimerDB

ANNOTATION OF CHIMERA FUSION

GenBank ID: DB256352 FASTA
Head Gene (1) Alignment: NFIC | OMIM: 600729 Tail Gene (2) Alignment: TPP1 | OMIM: 607998 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
478219+3366586338184421oncogene120011-6616346661685481protein-coding 561 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
NfI_DNAbd_pre-N (PF10524, IPR019548) 41 24 64 1.1e-31 94.900 Nuclear factor I protein pre-N-terminus
Peptidase_S8 (PF00082, IPR000209) 298 136 334 1.3e-07 17.200 Subtilase family
Updated: 2019-02-01
Owner: ChiTaRS
XM_017026834.2		1..214
100.0%		+
19
NM_000391.3		210..561
99.8%		-
11		1
0
0		exon-exon
2
Homo Sapiens		 ChimerDB

ANNOTATION OF CHIMERA FUSION

GenBank ID: AI291551 FASTA
Head Gene (1) Alignment: NFIC | OMIM: 600729 Tail Gene (2) Alignment: VSTM4 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
478219-34525553462964111oncogene19674010+491077724910789521protein-coding 449 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
NfI_DNAbd_pre-N (PF10524, IPR019548) 41 7 47 3e-31 93.400 Nuclear factor I protein pre-N-terminus
MH1 (PF03165, IPR003619, SM00523) 103 69 173 1.6e-14 40.300 MH1 domain
CTF_NFI (PF00859, IPR000647) 293 217 507 4.1e-147 475.800 CTF/NF-I family transcription modulation region
Updated: 2019-02-20
Owner: ChiTaRS
NM_205843.2		2..326
99.4%		-
19		 VSTM4
Q8IW00
XM_017015827.2		326..449
100.0%		+
10		1
0
0		exon-exon
3
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: NM_001145076 FASTA
UniProtKB: Q9HC35 Echinoderm microtubule-associated protein-like 4 (EMAP-4) (Restrictedly overexpressed proliferation-associated protein) (Ropp 120)
Fusion Gene(s): EML4 C2orf2 EMAPL4
Head Gene (1) Alignment: EML4 | OMIM: 607442 Tail Gene (2) Alignment: NFIC | OMIM: 600729 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
274362+4216933842332548251oncogene478219+3465355346544811oncogene 5403 hg38
Updated: 2019-06-05
Owner: ChiTaRS
XM_006711992.2		1..5387
100.0%		+
2
NM_205843.2		5351..5403
97.0%		+
19		1
0
0		exon-exon
4
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: AW139210 FASTA
Head Gene (1) Alignment: LOC105369197 Tail Gene (2) Alignment: NFIC | OMIM: 600729 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
10536919719-518158635181608000ncRNA478219-3468948346919711oncogene 259 hg38
Updated: 2019-04-13
Owner: ChiTaRS
LOC105369197
XR_001753987.1		2..53
97.7%		-
19
NM_001245002.1		15..259
100.0%		-
19		1
0
0		intron-exon
5
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: AW449202 FASTA
Head Gene (1) Alignment: LOC105369197 Tail Gene (2) Alignment: NFIC | OMIM: 600729 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
10536919719-518158635181608000ncRNA478219-3468950346919711oncogene 257 hg38
Updated: 2019-04-13
Owner: ChiTaRS
LOC105369197
XR_001753987.1		2..53
97.7%		-
19
NM_001245002.1		15..257
100.0%		-
19		1
0
0		intron-exon
6
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: BF946375 FASTA
Head Gene (1) Alignment: ARHGAP17 | OMIM: 608293 Tail Gene (2) Alignment: NFIC | OMIM: 600729 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
5511416+249312162493136541protein-coding478219-3452481345259241oncogene 268 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
BAR (PF03114, IPR004148, SM00721) 239 1 239 8.4e-69 217.900 BAR domain
RhoGAP (PF00620, IPR000198, SM00324) 152 266 416 3e-47 146.400 RhoGAP domain
Updated: 2019-02-20
Owner: ChiTaRS
XR_950809.2		13..157
99.4%		+
16
XM_017026834.2		149..260
99.2%		-
19		1
0
0		exon-exon
7
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: BF946388 FASTA
Head Gene (1) Alignment: ARHGAP17 | OMIM: 608293 Tail Gene (2) Alignment: NFIC | OMIM: 600729 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
5511416+249312162493136541protein-coding478219-3449059345259251oncogene 344 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
BAR (PF03114, IPR004148, SM00721) 239 1 239 9.2e-69 217.800 BAR domain
RhoGAP (PF00620, IPR000198, SM00324) 152 266 416 3.3e-47 146.300 RhoGAP domain
Updated: 2019-02-20
Owner: ChiTaRS
XR_950809.2		18..162
98.7%		+
16
XM_017026834.2		154..344
99.5%		-
19		1
0
0		exon-exon
8
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: BP431705 FASTA
Head Gene (1) Alignment: NFIC | OMIM: 600729 Tail Gene (2) Alignment: LINC01476 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
478219+3468928346919711oncogene10192772817-595106775951107800ncRNA 311 hg38
Updated: 2019-03-30
Owner: ChiTaRS
NM_001245002.1		5..269
99.7%		+
19		 LINC01476
NR_110813.1		230..300
97.3%		-
17		1
0
0		exon-intron
9
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: EC444831 FASTA
Head Gene (1) Alignment: SLC23A2 | OMIM: 603791 Tail Gene (2) Alignment: NFIC | OMIM: 600729 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
996220-4974618497485200protein-coding478219-3407102340748800oncogene 97 hg38
Updated: 2019-04-14
Owner: ChiTaRS
NM_203327.1		14..69
96.4%		-
20
NM_001245002.1		26..81
98.2%		-
19		1
0
0		intron-intron
10
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: BQ028270 FASTA
Head Gene (1) Alignment: NFIC | OMIM: 600729 Tail Gene (2) Alignment: TRAPPC10 | OMIM: 602103 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
478219-3465395346544811oncogene710921-440597164406026400protein-coding 566 hg38
Updated: 2019-04-13
Owner: ChiTaRS
NM_001245002.1		1..54
97.5%		-
19
XM_011529715.2		18..566
99.9%		-
21		1
0
0		exon-intron

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