Result for the search: Gene Name/NCBI ID(s): 'NFIC'

Total of fusion sequences: 29 (from 1,389,894 parsed EST/mRNAs. Last update 2019-07-07)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	-	16	17
Homo Sapiens	ChimerDB DB256352 ANNOTATION OF CHIMERA FUSION GenBank ID: DB256352 FASTA Head Gene (1) Alignment: NFIC | OMIM: 600729 Tail Gene (2) Alignment: TPP1 | OMIM: 607998 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 4782 19 + 3366586 3381844 2 1 oncogene 1200 11 - 6616346 6616854 8 1 protein-coding 561 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to NfI_DNAbd_pre-N (PF10524, IPR019548) 41 24 64 1.1e-31 94.900 Nuclear factor I protein pre-N-terminus Peptidase_S8 (PF00082, IPR000209) 298 136 334 1.3e-07 17.200 Subtilase family Updated: 2019-02-01 Owner: ChiTaRS	NFIC A0A286YEX4 P08651 Q13051 Q6FI30 XM_017026834.2	1..214 100.0%	+ 19	TPP1 A0A2R8Y6T9 A0A2R8Y7I4 A0A2R8Y7U1 A0A2R8YCK4 A0A2R8YD45 A0A2R8YD72 A0A2R8YDY1 A0A2R8YE64 A0A2R8YGD1 D3DQU2 E7EV34 E9PME9 E9PPA4 O14773 NM_000391.3	210..561 99.8%	- 11	1 0 0	exon-exon
Homo Sapiens	ChimerDB AI291551 ANNOTATION OF CHIMERA FUSION GenBank ID: AI291551 FASTA Head Gene (1) Alignment: NFIC | OMIM: 600729 Tail Gene (2) Alignment: VSTM4 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 4782 19 - 3452555 3462964 11 1 oncogene 196740 10 + 49107772 49107895 2 1 protein-coding 449 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to NfI_DNAbd_pre-N (PF10524, IPR019548) 41 7 47 3e-31 93.400 Nuclear factor I protein pre-N-terminus MH1 (PF03165, IPR003619, SM00523) 103 69 173 1.6e-14 40.300 MH1 domain CTF_NFI (PF00859, IPR000647) 293 217 507 4.1e-147 475.800 CTF/NF-I family transcription modulation region Updated: 2019-02-20 Owner: ChiTaRS	NFIC A0A286YEX4 P08651 Q13051 Q6FI30 NM_205843.2	2..326 99.4%	- 19	VSTM4 Q8IW00 XM_017015827.2	326..449 100.0%	+ 10	1 0 0	exon-exon
Homo Sapiens	BP431705 ANNOTATION OF CHIMERA FUSION GenBank ID: BP431705 FASTA Head Gene (1) Alignment: NFIC | OMIM: 600729 Tail Gene (2) Alignment: LINC01476 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 4782 19 + 3468928 3469197 1 1 oncogene 101927728 17 - 59510677 59511078 0 0 ncRNA 311 hg38 Updated: 2019-03-30 Owner: ChiTaRS	NFIC A0A286YEX4 P08651 Q13051 Q6FI30 NM_001245002.1	5..269 99.7%	+ 19	LINC01476 NR_110813.1	230..300 97.3%	- 17	1 0 0	exon-intron
Homo Sapiens	EC444831 ANNOTATION OF CHIMERA FUSION GenBank ID: EC444831 FASTA Head Gene (1) Alignment: SLC23A2 | OMIM: 603791 Tail Gene (2) Alignment: NFIC | OMIM: 600729 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 9962 20 - 4974618 4974852 0 0 protein-coding 4782 19 - 3407102 3407488 0 0 oncogene 97 hg38 Updated: 2019-04-14 Owner: ChiTaRS	SLC23A2 A0A140VK48 D3DVZ8 H0Y544 Q4ZGM1 Q9UGH3 NM_203327.1	14..69 96.4%	- 20	NFIC A0A286YEX4 P08651 Q13051 Q6FI30 NM_001245002.1	26..81 98.2%	- 19	1 0 0	intron-intron
Homo Sapiens	AW449202 ANNOTATION OF CHIMERA FUSION GenBank ID: AW449202 FASTA Head Gene (1) Alignment: LOC105369197 Tail Gene (2) Alignment: NFIC | OMIM: 600729 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 105369197 19 - 51815863 51816080 0 0 ncRNA 4782 19 - 3468950 3469197 1 1 oncogene 257 hg38 Updated: 2019-04-13 Owner: ChiTaRS	LOC105369197 XR_001753987.1	2..53 97.7%	- 19	NFIC A0A286YEX4 P08651 Q13051 Q6FI30 NM_001245002.1	15..257 100.0%	- 19	1 0 0	intron-exon
Homo Sapiens	AW139210 ANNOTATION OF CHIMERA FUSION GenBank ID: AW139210 FASTA Head Gene (1) Alignment: LOC105369197 Tail Gene (2) Alignment: NFIC | OMIM: 600729 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 105369197 19 - 51815863 51816080 0 0 ncRNA 4782 19 - 3468948 3469197 1 1 oncogene 259 hg38 Updated: 2019-04-13 Owner: ChiTaRS	LOC105369197 XR_001753987.1	2..53 97.7%	- 19	NFIC A0A286YEX4 P08651 Q13051 Q6FI30 NM_001245002.1	15..259 100.0%	- 19	1 0 0	intron-exon
Homo Sapiens	BQ028270 ANNOTATION OF CHIMERA FUSION GenBank ID: BQ028270 FASTA Head Gene (1) Alignment: NFIC | OMIM: 600729 Tail Gene (2) Alignment: TRAPPC10 | OMIM: 602103 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 4782 19 - 3465395 3465448 1 1 oncogene 7109 21 - 44059716 44060264 0 0 protein-coding 566 hg38 Updated: 2019-04-13 Owner: ChiTaRS	NFIC A0A286YEX4 P08651 Q13051 Q6FI30 NM_001245002.1	1..54 97.5%	- 19	TRAPPC10 F8WE24 P48553 Q76NH5 XM_011529715.2	18..566 99.9%	- 21	1 0 0	exon-intron
Homo Sapiens	CF139707 ANNOTATION OF CHIMERA FUSION GenBank ID: CF139707 FASTA Head Gene (1) Alignment: NFIC | OMIM: 600729 Tail Gene (2) Alignment: RRNAD1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 4782 19 - 3351477 3351746 0 0 oncogene 51093 1 + 156729461 156729694 1 1 protein-coding 272 hg38 Updated: 2019-04-13 Owner: ChiTaRS	NFIC A0A286YEX4 P08651 Q13051 Q6FI30 ENST00000641145	1..53 98.2%	- 19	RRNAD1 E5RHI7 E5RI42 E5RIL6 E5RJL6 H0YBL9 Q96FB5 XM_017001404.1	8..241 100.0%	+ 1	1 0 0	intron-exon
Homo Sapiens	AA172390 ANNOTATION OF CHIMERA FUSION GenBank ID: AA172390 FASTA Head Gene (1) Alignment: NFIC | OMIM: 600729 Tail Gene (2) Alignment: RPS3AP6 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 4782 19 - 3465359 3465451 11 1 oncogene 145767 15 - 59769016 59769209 1 1 pseudo 208 hg38 Updated: 2019-02-17 Owner: ChiTaRS	NFIC A0A286YEX4 P08651 Q13051 Q6FI30 NM_205843.2	1..49 98.0%	- 19	RPS3AP6	9..201 99.5%	- 15	1 0 0	exon-exon
Homo Sapiens	AW296688 ANNOTATION OF CHIMERA FUSION GenBank ID: AW296688 FASTA Head Gene (1) Alignment: GRID1 | OMIM: 610659 Tail Gene (2) Alignment: NFIC | OMIM: 600729 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 2894 10 - 86362393 86362536 15 0 protein-coding 4782 19 + 3464527 3464766 1 1 oncogene 385 hg38 Updated: 2019-02-20 Owner: ChiTaRS	GRID1 G3V186 Q9ULK0 XM_011539720.2	8..151 98.7%	- 10	NFIC A0A286YEX4 P08651 Q13051 Q6FI30 NM_205843.2	146..385 99.6%	+ 19	1 0 0	intron-exon

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