Result for the search of Gene Name/NCBI ID(s): 'NCOA6'

Total of fusion sequences: 24 (from 1493742 parsed EST/mRNAs. Last update 2019-12-11 12:04:16)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	SplGraphs AL706432 ANNOTATION OF CHIMERA FUSION GenBank ID: AL706432 FASTA Head Gene (1) Alignment: PTTG1IP | OMIM: 603784 Tail Gene (2) Alignment: NCOA6 | OMIM: 605299 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 754 21 - 44850509 44850995 1 1 oncogene 23054 20 - 34757971 34758088 8 1 oncogene 602 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to RNHCP (PF12647, IPR024439) 90 585 676 6.7e-06 12.400 RNHCP domain EPL1 (PF10513, IPR019542) 157 631 787 0.00044 6.900 Enhancer of polycomb-like DUF3729 (PF12526, IPR022202) 113 1062 1146 0.1 0.400 Protein of unknown function (DUF3729) NST1 (PF13945, IPR025279) 192 1280 1338 0.0066 2.700 Salt tolerance down-regulator Fes1 (PF08609, IPR013918) 93 1383 1441 0.076 0.300 Nucleotide exchange factor Fes1 DUF719 (PF05334, IPR007998) 191 1784 1906 0.026 0.900 Protein of unknown function (DUF719) Updated: 2019-02-20 Owner: ChiTaRS	PTTG1IP A8MXQ1 A8MZH8 B4DPZ0 P53801 NM_004339.3	2..488 100.0%	- 21	NCOA6 A0A0D9SFT8 F6M2K2 F6M2K3 F6M2K4 Q14686 Q1RMZ3 XM_017027740.2	485..602 99.2%	- 20	1 0 0	exon-exon
2 Homo Sapiens	BG941198 ANNOTATION OF CHIMERA FUSION GenBank ID: BG941198 FASTA Head Gene (1) Alignment: RNA45SN3 Tail Gene (2) Alignment: NCOA6 | OMIM: 605299 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 109910379 21 + 8395668 8395764 1 1 23054 20 - 34699032 34699060 0 0 oncogene 130 hg38 Updated: 2019-04-18 Owner: ChiTaRS	RNA45SN3 NR_146151.1	1..97 100.0%	+ 21	NCOA6 A0A0D9SFT8 F6M2K2 F6M2K3 F6M2K4 Q14686 Q1RMZ3 ENST00000374796	96..124 100.0%	- 20	1 0 0	exon-intron
3 Homo Sapiens	BG941199 ANNOTATION OF CHIMERA FUSION GenBank ID: BG941199 FASTA Head Gene (1) Alignment: NCOA6 | OMIM: 605299 Tail Gene (2) Alignment: RNA45SN3 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 23054 20 + 34699032 34699060 0 0 oncogene 109910379 21 - 8395668 8395764 1 1 130 hg38 Updated: 2019-04-18 Owner: ChiTaRS	NCOA6 A0A0D9SFT8 F6M2K2 F6M2K3 F6M2K4 Q14686 Q1RMZ3 ENST00000374796	7..35 100.0%	+ 20	RNA45SN3 NR_146151.1	34..130 99.0%	- 21	1 0 0	intron-exon
4 Homo Sapiens	FI185335 ANNOTATION OF CHIMERA FUSION GenBank ID: FI185335 FASTA Head Gene (1) Alignment: PRKX | OMIM: 300083 Tail Gene (2) Alignment: NCOA6 | OMIM: 605299 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 5613 X - 3634705 3634751 0 0 protein-coding 23054 20 + 34784755 34785115 0 0 oncogene 91 hg38 Updated: 2019-03-03 Owner: ChiTaRS	PRKX A0A024RBU5 P51817 NM_005044.4	1..45 97.4%	- X	NCOA6 A0A0D9SFT8 F6M2K2 F6M2K3 F6M2K4 Q14686 Q1RMZ3 XM_017027740.2	14..90 95.2%	+ 20	1 0 0	intron-intron
5 Homo Sapiens	BG944736 ANNOTATION OF CHIMERA FUSION GenBank ID: BG944736 FASTA Head Gene (1) Alignment: NCOA6 | OMIM: 605299 Tail Gene (2) Alignment: RNF216P1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 23054 20 + 34699030 34699060 0 0 oncogene 441191 7 - 5011554 5011961 0 0 pseudo 443 hg38 Updated: 2019-04-18 Owner: ChiTaRS	NCOA6 A0A0D9SFT8 F6M2K2 F6M2K3 F6M2K4 Q14686 Q1RMZ3 ENST00000374796	6..36 100.0%	+ 20	RNF216P1 Q6NUR6 ENST00000404404	36..443 100.0%	- 7	1 0 0	intron-intron
6 Homo Sapiens	BM987809 ANNOTATION OF CHIMERA FUSION GenBank ID: BM987809 FASTA Head Gene (1) Alignment: NCOA6 | OMIM: 605299 Tail Gene (2) Alignment: MPRIP | OMIM: 612935 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 23054 20 - 34739878 34764698 8 0 oncogene 23164 17 - 17188918 17189331 1 1 protein-coding 448 hg38 Updated: 2019-04-13 Owner: ChiTaRS	NCOA6 A0A0D9SFT8 F6M2K2 F6M2K3 F6M2K4 Q14686 Q1RMZ3 XM_017027747.2	4..164 95.8%	- 20	MPRIP A0A1W2PPU9 A0A494BZV2 A8CGI0 A8CGI1 A8MZF8 B9EGI2 H0Y2S9 H0Y7E2 H7C3G6 J3KSK7 J3KSW8 J3QL44 J3QRL2 K7EJ14 K7EL39 Q5ZEZ6 Q6WCQ1 Q96EE5 XM_011523762.2	35..448 99.8%	- 17	1 0 0	intron-exon
7 Homo Sapiens	BG940004 ANNOTATION OF CHIMERA FUSION GenBank ID: BG940004 FASTA Head Gene (1) Alignment: NCOA6 | OMIM: 605299 Tail Gene (2) Alignment: MT-CO2 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 23054 20 + 34699028 34699057 0 0 oncogene 4513 MT - 8045 8293 1 1 protein-coding 279 hg38 Updated: 2019-04-18 Owner: ChiTaRS	NCOA6 A0A0D9SFT8 F6M2K2 F6M2K3 F6M2K4 Q14686 Q1RMZ3 ENST00000374796	1..30 100.0%	+ 20	MT-CO2 B1W855 C5H6K5 C5H6K6 C5H6K7 C5H6L3 C5H6M3 C5H6M4 C5H6M5 C5H6M7 C5H6M8 D2Y6Y1 D2Y6Y2 E2DTL8 I6PRP7 I6PZI4 P00403 Q4GCC3 Q4GCG2 Q4GCZ4 Q4GHE1 Q4GQP0 Q4GVP5 Q4GW12 Q4R1L3 Q4R1L5 Q5SA98 Q7Y626 Q7Y6M3 Q7Y6N0 Q7YEH2 Q85KS0 Q8HNR6 Q8HQB7 Q9B1F9 Q9B2U8	31..279 99.2%	- MT	1 0 0	intron-exon
8 Homo Sapiens	BG944358 ANNOTATION OF CHIMERA FUSION GenBank ID: BG944358 FASTA Head Gene (1) Alignment: NCOA6 | OMIM: 605299 Tail Gene (2) Alignment: SUMO1 | OMIM: 601912 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 23054 20 + 34699028 34699057 0 0 oncogene 7341 2 + 202206607 202207097 1 1 protein-coding 519 hg38 Updated: 2019-04-18 Owner: ChiTaRS	NCOA6 A0A0D9SFT8 F6M2K2 F6M2K3 F6M2K4 Q14686 Q1RMZ3 ENST00000374796	1..30 100.0%	+ 20	SUMO1 A0A024R3Z2 B8ZZ67 B8ZZJ0 B8ZZN6 B9A032 F8WBI1 P63165 NM_001005781.1	30..519 99.8%	+ 2	1 0 0	intron-exon
9 Homo Sapiens	BF992646 ANNOTATION OF CHIMERA FUSION GenBank ID: BF992646 FASTA Head Gene (1) Alignment: NCOA6 | OMIM: 605299 Tail Gene (2) Alignment: NCOA6 | OMIM: 605299 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 23054 20 + 34741476 34741644 6 1 oncogene 23054 20 + 34741126 34741225 13 1 oncogene 271 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Nucleic_acid_bd (PF13820, IPR032715) 144 47 190 2.4e-58 182.300 Putative nucleic acid-binding region Presenilin (PF01080, IPR001108) 399 220 398 6.3e-05 7.900 Presenilin DUF3729 (PF12526, IPR022202) 113 673 755 0.072 1.000 Protein of unknown function (DUF3729) NST1 (PF13945, IPR025279) 192 889 947 0.0055 3.000 Salt tolerance down-regulator Gti1_Pac2 (PF09729, IPR018608) 180 894 1058 0.026 0.700 Gti1/Pac2 family Fes1 (PF08609, IPR013918) 93 992 1050 0.063 0.600 Nucleotide exchange factor Fes1 CPSF100_C (PF13299, IPR025069) 169 1398 1514 0.037 0.400 Cleavage and polyadenylation factor 2 C-terminal Updated: 2019-02-20 Owner: ChiTaRS	NCOA6 A0A0D9SFT8 F6M2K2 F6M2K3 F6M2K4 Q14686 Q1RMZ3 XR_001754214.2	9..177 100.0%	+ 20	NCOA6 A0A0D9SFT8 F6M2K2 F6M2K3 F6M2K4 Q14686 Q1RMZ3 XM_017027740.2	172..271 100.0%	+ 20	1 0 0	exon-exon
10 Homo Sapiens	CD654420 ANNOTATION OF CHIMERA FUSION GenBank ID: CD654420 FASTA Head Gene (1) Alignment: NCOA6 | OMIM: 605299 Tail Gene (2) Alignment: ZNF483 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 23054 20 - 34813460 34813480 16 0 oncogene 158399 9 - 111543689 111544440 1 1 protein-coding 816 hg38 Updated: 2019-02-20 Owner: ChiTaRS	NCOA6 A0A0D9SFT8 F6M2K2 F6M2K3 F6M2K4 Q14686 Q1RMZ3 XR_001754214.2	13..33 96.4%	- 20	ZNF483 A7MD06 Q5VZN3 Q6P088 Q8TF39 XM_017014338.1	20..769 99.4%	- 9	1 0 0	intron-exon

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