Result for the search of Gene Name/NCBI ID(s): 'NCBP3'

Total of fusion sequences: 9 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	ChimerDB AA972645 ANNOTATION OF CHIMERA FUSION GenBank ID: AA972645 FASTA Head Gene (1) Alignment: NCBP3 | OMIM: 616624 Tail Gene (2) Alignment: LRPAP1 | OMIM: 104225 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 55421 17 - 3812392 3812453 1 1 protein-coding 4043 4 - 3516128 3518151 6 1 protein-coding 342 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to NCBP3 (PF10309, IPR019416) 59 132 186 2.8e-24 71.100 Nuclear cap-binding protein subunit 3 Merozoite_SPAM (PF07133, IPR010784) 182 176 278 3.8e-05 9.900 Merozoite surface protein (SPAM) TRAP_alpha (PF03896, IPR005595) 285 183 300 5.7e-05 8.500 Translocon-associated protein (TRAP), alpha subunit RNA_pol_3_Rpc31 (PF11705, IPR024661) 230 287 381 3.5e-06 13.500 DNA-directed RNA polymerase III subunit Rpc31 Spt5_N (PF11942, IPR022581) 99 351 463 0.00024 8.400 Spt5 transcription elongation factor, acidic N-terminal IncA (PF04156, IPR007285) 190 526 629 0.009 1.900 IncA protein TLP-20 (PF06088, IPR009092) 169 542 612 0.011 1.800 Nucleopolyhedrovirus telokin-like protein-20 (TLP20) Alpha-2-MRAP_C (PF06401, IPR010483) 212 841 991 2.5e-45 141.200 Alpha-2-macroglobulin RAP, C-terminal domain Updated: 2019-02-20 Owner: ChiTaRS	NCBP3 K7ELP6 K7EQA5 L0R6D6 Q53F19 XM_011523954.3	1..62 100.0%	- 17	LRPAP1 A0A3B3IRQ7 D6REW6 P30533 NR_110005.1	56..244 98.5%	- 4	1 0 0	exon-exon
2 Homo Sapiens	ChimerDB AI279861 ANNOTATION OF CHIMERA FUSION GenBank ID: AI279861 FASTA Head Gene (1) Alignment: NCBP3 | OMIM: 616624 Tail Gene (2) Alignment: LRPAP1 | OMIM: 104225 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 55421 17 - 3812392 3812453 1 1 protein-coding 4043 4 - 3512969 3518151 8 1 protein-coding 501 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to NCBP3 (PF10309, IPR019416) 59 132 186 2.8e-24 71.100 Nuclear cap-binding protein subunit 3 Merozoite_SPAM (PF07133, IPR010784) 182 176 278 3.8e-05 9.900 Merozoite surface protein (SPAM) TRAP_alpha (PF03896, IPR005595) 285 183 300 5.8e-05 8.500 Translocon-associated protein (TRAP), alpha subunit RNA_pol_3_Rpc31 (PF11705, IPR024661) 230 287 381 3.5e-06 13.500 DNA-directed RNA polymerase III subunit Rpc31 Spt5_N (PF11942, IPR022581) 99 351 463 0.00024 8.400 Spt5 transcription elongation factor, acidic N-terminal IncA (PF04156, IPR007285) 190 526 629 0.009 1.900 IncA protein TLP-20 (PF06088, IPR009092) 169 542 612 0.011 1.800 Nucleopolyhedrovirus telokin-like protein-20 (TLP20) Alpha-2-MRAP_C (PF06401, IPR010483) 212 841 991 7.1e-45 139.700 Alpha-2-macroglobulin RAP, C-terminal domain Updated: 2019-02-20 Owner: ChiTaRS	NCBP3 K7ELP6 K7EQA5 L0R6D6 Q53F19 XM_011523954.3	1..62 100.0%	- 17	LRPAP1 A0A3B3IRQ7 D6REW6 P30533 NR_110005.1	56..501 99.6%	- 4	1 0 0	exon-exon
3 Homo Sapiens	ChimerDB AI291741 ANNOTATION OF CHIMERA FUSION GenBank ID: AI291741 FASTA Head Gene (1) Alignment: NCBP3 | OMIM: 616624 Tail Gene (2) Alignment: LRPAP1 | OMIM: 104225 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 55421 17 - 3812392 3812453 1 1 protein-coding 4043 4 - 3514783 3518151 7 1 protein-coding 475 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to NCBP3 (PF10309, IPR019416) 59 132 186 2.8e-24 71.100 Nuclear cap-binding protein subunit 3 Merozoite_SPAM (PF07133, IPR010784) 182 176 278 3.8e-05 9.900 Merozoite surface protein (SPAM) TRAP_alpha (PF03896, IPR005595) 285 183 300 5.7e-05 8.500 Translocon-associated protein (TRAP), alpha subunit RNA_pol_3_Rpc31 (PF11705, IPR024661) 230 287 381 3.5e-06 13.500 DNA-directed RNA polymerase III subunit Rpc31 Spt5_N (PF11942, IPR022581) 99 351 463 0.00024 8.400 Spt5 transcription elongation factor, acidic N-terminal IncA (PF04156, IPR007285) 190 526 629 0.009 1.900 IncA protein TLP-20 (PF06088, IPR009092) 169 542 612 0.011 1.800 Nucleopolyhedrovirus telokin-like protein-20 (TLP20) Alpha-2-MRAP_C (PF06401, IPR010483) 212 841 991 2.2e-45 141.400 Alpha-2-macroglobulin RAP, C-terminal domain Updated: 2019-02-20 Owner: ChiTaRS	NCBP3 K7ELP6 K7EQA5 L0R6D6 Q53F19 XM_011523954.3	1..62 100.0%	- 17	LRPAP1 A0A3B3IRQ7 D6REW6 P30533 NR_110005.1	56..402 98.6%	- 4	1 0 0	exon-exon
4 Homo Sapiens	EY123390 ANNOTATION OF CHIMERA FUSION GenBank ID: EY123390 FASTA Head Gene (1) Alignment: ITGAE | OMIM: 604682 Tail Gene (2) Alignment: NCBP3 | OMIM: 616624 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 3682 17 + 3746441 3746471 0 0 protein-coding 55421 17 + 3812150 3812471 1 1 protein-coding 336 hg38 Updated: 2019-03-26 Owner: ChiTaRS	ITGAE K7EQU0 P38570 XM_024450740.1	2..32 97.4%	+ 17	NCBP3 K7ELP6 K7EQA5 L0R6D6 Q53F19 XM_005256717.3	33..317 97.4%	+ 17	1 0 0	intron-exon	4HiC Hi-C contacts of chimeric junction Fusion Gene1 chromo- some1 junction start1 junction end1 Hi-C point1 Δ1 Gene2 chromo- some2 junction start2 junction end2 Hi-C point2 Δ2 Cell lines (Cell_ID,) PubMed(,s) 2 3 19 - - 32 - 8 25 - - 33 - 34 - EY123390 ITGAE 17 3746470 3746471 3736706 9764 NCBP3 17 3812150 3812151 3806706 5444 GM12878 (CVCL_7526), K-562 (CVCL_0004) 25497547, 25497547 EY123390 ITGAE 17 3746470 3746471 3736706 9764 NCBP3 17 3812150 3812151 3816706 4555 GM12878 (CVCL_7526), K-562 (CVCL_0004) 25497547, 25497547 EY123390 ITGAE 17 3746470 3746471 3746706 235 NCBP3 17 3812150 3812151 3806706 5444 GM12878 (CVCL_7526), K-562 (CVCL_0004) 25497547, 25497547 EY123390 ITGAE 17 3746470 3746471 3746706 235 NCBP3 17 3812150 3812151 3816706 4555 GM12878 (CVCL_7526), K-562 (CVCL_0004) 25497547, 25497547
5 Homo Sapiens	BX281026 ANNOTATION OF CHIMERA FUSION GenBank ID: BX281026 FASTA Head Gene (1) Alignment: NCBP3 | OMIM: 616624 Tail Gene (2) Alignment: NCBP3 | OMIM: 616624 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 55421 17 - 3813137 3813276 2 1 protein-coding 55421 17 - 3826102 3840192 5 1 protein-coding 497 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to NCBP3 (PF10309, IPR019416) 59 123 177 3.2e-24 70.900 Nuclear cap-binding protein subunit 3 Merozoite_SPAM (PF07133, IPR010784) 182 167 268 3.6e-05 10.000 Merozoite surface protein (SPAM) RNA_pol_3_Rpc31 (PF11705, IPR024661) 230 280 372 4.7e-06 13.100 DNA-directed RNA polymerase III subunit Rpc31 Spt5_N (PF11942, IPR022581) 99 342 453 0.00041 7.600 Spt5 transcription elongation factor, acidic N-terminal M-factor (PF03855, IPR005555) 43 438 462 0.0014 5.100 M-factor SPT6_acidic (PF14632, IPR028083) 89 527 600 0.025 1.500 Acidic N-terminal SPT6 Phage_Gp23 (PF10669, IPR018926) 121 572 624 0.002 4.700 Protein gp23 (Bacteriophage A118) DUF3381 (PF11861, IPR024576) 160 1018 1101 0.0059 2.700 Domain of unknown function (DUF3381) Updated: 2019-02-21 Owner: ChiTaRS	NCBP3 K7ELP6 K7EQA5 L0R6D6 Q53F19 XM_011523954.3	1..140 100.0%	- 17	NCBP3 K7ELP6 K7EQA5 L0R6D6 Q53F19 XM_011523954.3	130..462 100.0%	- 17	1 0 0	exon-exon	1HiC Hi-C contacts of chimeric junction Fusion Gene1 chromo- some1 junction start1 junction end1 Hi-C point1 Δ1 Gene2 chromo- some2 junction start2 junction end2 Hi-C point2 Δ2 Cell lines (Cell_ID,) PubMed(,s) 2 3 19 - - 32 - 8 25 - - 33 - 34 - BX281026 NCBP3 17 3813266 3813276 3816706 3430 NCBP3 17 3826102 3826112 3816706 9396 GM12878 (CVCL_7526) 25497547
6 Homo Sapiens	CB048102 ANNOTATION OF CHIMERA FUSION GenBank ID: CB048102 FASTA Head Gene (1) Alignment: NCBP3 | OMIM: 616624 Tail Gene (2) Alignment: CFDP1 | OMIM: 608108 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 55421 17 - 3841833 3841852 0 0 protein-coding 10428 16 - 75328144 75328624 0 0 protein-coding 574 hg38 Updated: 2019-04-13 Owner: ChiTaRS	NCBP3 K7ELP6 K7EQA5 L0R6D6 Q53F19 XM_005256717.3	2..21 100.0%	- 17	CFDP1 A0A087WXQ2 A0A0H5APX3 A0A0H5AUJ9 A0A0H5B9V7 H3BQ17 J3KT89 Q9UEE9 XR_001751818.2	5..472 96.7%	- 16	1 0 0	intron-intron
7 Homo Sapiens	FN148566 ANNOTATION OF CHIMERA FUSION GenBank ID: FN148566 FASTA Head Gene (1) Alignment: ARNTL2 | OMIM: 614517 Tail Gene (2) Alignment: NCBP3 | OMIM: 616624 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 56938 12 - 27346940 27346961 1 0 protein-coding 55421 17 - 3825569 3825647 1 0 protein-coding 82 hg38 Updated: 2018-08-30 Owner: ChiTaRS	ARNTL2 H0Y5R1 Q8WYA1	1..22 95.5%	- 12	NCBP3 K7ELP6 K7EQA5 L0R6D6 Q53F19	4..82 98.8%	- 17	1 0 0	intron-intron
8 Homo Sapiens	EY123376 ANNOTATION OF CHIMERA FUSION GenBank ID: EY123376 FASTA Head Gene (1) Alignment: SWT1 Tail Gene (2) Alignment: NCBP3 | OMIM: 616624 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 54823 1 + 185270287 185270491 0 0 protein-coding 55421 17 + 3812193 3812491 1 1 protein-coding 341 hg38 Updated: 2019-03-03 Owner: ChiTaRS	SWT1 Q5T5J6 Q5TC96 XR_001737246.2	15..73 97.0%	+ 1	NCBP3 K7ELP6 K7EQA5 L0R6D6 Q53F19 XM_005256717.3	65..335 97.8%	+ 17	1 0 0	intron-exon
9 Homo Sapiens	AW817092 ANNOTATION OF CHIMERA FUSION GenBank ID: AW817092 FASTA Head Gene (1) Alignment: EGLN3 | OMIM: 606426 Tail Gene (2) Alignment: NCBP3 | OMIM: 616624 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 112399 14 + 33935787 33935924 4 0 tumor suppressor, protein-coding 55421 17 + 3822784 3823041 7 0 protein-coding 401 hg38 Updated: 2019-02-20 Owner: ChiTaRS	EGLN3 A6XP73 F8VR39 F8W1G2 G3V3M1 Q3T1B0 Q9H6Z9 NM_001308103.1	15..151 100.0%	+ 14	NCBP3 K7ELP6 K7EQA5 L0R6D6 Q53F19 XM_011523954.3	144..401 100.0%	+ 17	1 0 0	intron-intron

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