Result for the search of Gene Name/NCBI ID(s): 'MYO1C'

Total of fusion sequences: 9 (from 3,568,812 parsed EST/mRNAs. Last update 2020-07-14 10:36:55)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	SplGraphs BP285732 ANNOTATION OF CHIMERA FUSION GenBank ID: BP285732 FASTA Head Gene (1) Alignment: COL1A2 | OMIM: 120160 Tail Gene (2) Alignment: MYO1C | OMIM: 606538 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1278 7 + 94394895 94404601 7 0 oncogene 4641 17 - 1478447 1478690 11 1 protein-coding 583 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Collagen (PF01391, IPR008160) 60 29 82 1e-11 30.800 Collagen triple helix repeat (20 copies) Updated: 2019-02-21 Owner: ChiTaRS	COL1A2 A0A087WTA8 A0A0S2Z3H5 A0A0S2Z3K0 A0A384MDU2 A2TIK1 P08123 Q14036 Q16033 Q16452 Q75N18 Q7KZ71 NM_000089.3	1..462 99.8%	+ 7	MYO1C A1L180 D3DTH7 F5H6E2 I3L204 I3L2C3 I3L3F5 I3L3Y6 I3L501 O00159 NM_033375.4	463..583 100.0%	- 17	1 0 0	intron-exon
2 Homo Sapiens	ChimerDB DA833622 ANNOTATION OF CHIMERA FUSION GenBank ID: DA833622 FASTA Head Gene (1) Alignment: CYP19A1 | OMIM: 107910 Tail Gene (2) Alignment: MYO1C | OMIM: 606538 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1588 15 - 51227848 51338595 11 1 oncogene 4641 17 - 1468014 1468126 28 1 protein-coding 628 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to p450 (PF00067, IPR001128) 463 92 174 2.8e-09 22.200 Cytochrome P450 Myosin_TH1 (PF06017, IPR010926) 185 181 310 1e-19 57.100 Unconventional myosin tail, actin- and lipid-binding Updated: 2019-02-21 Owner: ChiTaRS	CYP19A1 A0A024R5S8 A0A087WVQ0 E7EPL6 E7EQ08 E9PGZ6 H0YK57 H0YKN1 H0YLP1 H0YLS2 H0YNJ7 P11511 Q05CU4 Q16449 Q45RG7 Q7Z471 Q8IYG4 NM_031226.2	1..521 99.9%	- 15	MYO1C A1L180 D3DTH7 F5H6E2 I3L204 I3L2C3 I3L3F5 I3L3Y6 I3L501 O00159 NM_033375.4	514..628 95.5%	- 17	1 0 0	exon-exon
3 Homo Sapiens	ChimerDB CD515671 ANNOTATION OF CHIMERA FUSION GenBank ID: CD515671 FASTA Head Gene (1) Alignment: MYO1C | OMIM: 606538 Tail Gene (2) Alignment: IFT22 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 4641 17 - 1479635 1482557 28 1 protein-coding 64792 7 - 101315157 101318184 6 1 protein-coding 884 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Myosin_head (PF00063, IPR001609, SM00242) 677 48 348 3.8e-117 378.200 Myosin head (motor domain) Updated: 2019-02-21 Owner: ChiTaRS	MYO1C A1L180 D3DTH7 F5H6E2 I3L204 I3L2C3 I3L3F5 I3L3Y6 I3L501 O00159 NM_033375.4	32..463 99.8%	- 17	IFT22 A0A024QYT8 A0A024QYV3 F8WDY0 Q9H7X7 NM_001287525.1	457..861 98.0%	- 7	1 0 0	exon-exon
4 Homo Sapiens	BQ425374 ANNOTATION OF CHIMERA FUSION GenBank ID: BQ425374 FASTA Head Gene (1) Alignment: MYO1C | OMIM: 606538 Tail Gene (2) Alignment: MYO1C | OMIM: 606538 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 4641 17 - 1464505 1464796 1 1 protein-coding 4641 17 - 1482867 1484304 4 1 protein-coding 875 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Myosin_head (PF00063, IPR001609, SM00242) 677 156 826 4e-250 817.700 Myosin head (motor domain) IQ (PF00612, IPR000048, SM00015) 21 843 863 1.4e-07 17.500 IQ calmodulin-binding motif Myosin_TH1 (PF06017, IPR010926) 185 982 1163 1.5e-34 105.400 Unconventional myosin tail, actin- and lipid-binding Updated: 2019-02-21 Owner: ChiTaRS	MYO1C A1L180 D3DTH7 F5H6E2 I3L204 I3L2C3 I3L3F5 I3L3Y6 I3L501 O00159 NM_033375.4	2..293 99.7%	- 17	MYO1C A1L180 D3DTH7 F5H6E2 I3L204 I3L2C3 I3L3F5 I3L3Y6 I3L501 O00159 NM_033375.4	285..751 99.6%	- 17	0 15977 2158	exon-exon	2HiC Hi-C contacts of chimeric junction Fusion Gene1 chromo- some1 junction start1 junction end1 Hi-C point1 Δ1 Gene2 chromo- some2 junction start2 junction end2 Hi-C point2 Δ2 Cell lines (Cell_ID,) PubMed(,s) 2 3 19 - - 32 - 8 25 - - 33 - 34 - BQ425374 MYO1C 17 1464788 1464796 1466706 1910 MYO1C 17 1482867 1482875 1476706 6161 K-562 (CVCL_0004) 25497547 BQ425374 MYO1C 17 1464788 1464796 1466706 1910 MYO1C 17 1482867 1482875 1486706 3831 HUVEC-C (CVCL_2959) 25497547
5 Homo Sapiens	EC567304 ANNOTATION OF CHIMERA FUSION GenBank ID: EC567304 FASTA Head Gene (1) Alignment: MYO1C | OMIM: 606538 Tail Gene (2) Alignment: MYO1C | OMIM: 606538 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 4641 17 - 1480709 1480731 1 1 protein-coding 4641 17 + 1480727 1480773 1 1 protein-coding 112 hg38 Updated: 2019-03-27 Owner: ChiTaRS	MYO1C A1L180 D3DTH7 F5H6E2 I3L204 I3L2C3 I3L3F5 I3L3Y6 I3L501 O00159 XM_024450768.1	1..23 100.0%	- 17	MYO1C A1L180 D3DTH7 F5H6E2 I3L204 I3L2C3 I3L3F5 I3L3Y6 I3L501 O00159 XM_024450768.1	18..64 97.9%	+ 17	0 15977 2158	exon-exon	2HiC Hi-C contacts of chimeric junction Fusion Gene1 chromo- some1 junction start1 junction end1 Hi-C point1 Δ1 Gene2 chromo- some2 junction start2 junction end2 Hi-C point2 Δ2 Cell lines (Cell_ID,) PubMed(,s) 2 3 19 - - 32 - 8 25 - - 33 - 34 - EC567304 MYO1C 17 1480726 1480731 1476706 4020 MYO1C 17 1480727 1480732 1486706 5974 HUVEC-C (CVCL_2959) 25497547 EC567304 MYO1C 17 1480726 1480731 1486706 5975 MYO1C 17 1480727 1480732 1486706 5974 HUVEC-C (CVCL_2959), hTERT-RPE1 (CVCL_4388) 25497547, 27432957
6 Homo Sapiens	BE772334 ANNOTATION OF CHIMERA FUSION GenBank ID: BE772334 FASTA Head Gene (1) Alignment: STRBP | OMIM: 611138 Tail Gene (2) Alignment: MYO1C | OMIM: 606538 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 55342 9 + 123258166 123258367 0 0 protein-coding 4641 17 + 1465245 1465400 1 1 protein-coding 353 hg38 Updated: 2019-04-14 Owner: ChiTaRS	STRBP A0A0S2Z5K8 E9PKQ0 H0YC91 H0YD00 H0YD70 Q5JPA5 Q96SI9 V9HWK4 XR_001746347.1	1..202 99.6%	+ 9	MYO1C A1L180 D3DTH7 F5H6E2 I3L204 I3L2C3 I3L3F5 I3L3Y6 I3L501 O00159 XM_024450768.1	198..353 100.0%	+ 17	1 0 0	intron-exon
7 Homo Sapiens	BE772353 ANNOTATION OF CHIMERA FUSION GenBank ID: BE772353 FASTA Head Gene (1) Alignment: STRBP | OMIM: 611138 Tail Gene (2) Alignment: MYO1C | OMIM: 606538 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 55342 9 + 123258166 123258367 0 0 protein-coding 4641 17 + 1465245 1465400 1 1 protein-coding 353 hg38 Updated: 2019-04-14 Owner: ChiTaRS	STRBP A0A0S2Z5K8 E9PKQ0 H0YC91 H0YD00 H0YD70 Q5JPA5 Q96SI9 V9HWK4 XR_001746347.1	1..202 99.6%	+ 9	MYO1C A1L180 D3DTH7 F5H6E2 I3L204 I3L2C3 I3L3F5 I3L3Y6 I3L501 O00159 XM_024450768.1	198..353 100.0%	+ 17	1 0 0	intron-exon
8 Homo Sapiens	AI970685 ANNOTATION OF CHIMERA FUSION GenBank ID: AI970685 FASTA Head Gene (1) Alignment: MYO1C | OMIM: 606538 Tail Gene (2) Alignment: RNA45SN2 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 4641 17 + 1464214 1464430 1 1 protein-coding 109864279 21 - 8216493 8216548 1 1 318 hg38 Updated: 2019-04-14 Owner: ChiTaRS	MYO1C A1L180 D3DTH7 F5H6E2 I3L204 I3L2C3 I3L3F5 I3L3Y6 I3L501 O00159 XM_024450768.1	51..267 95.0%	+ 17	RNA45SN2 NR_146144.1	263..318 100.0%	- 21	1 0 0	exon-exon
9 Homo Sapiens	EC549956 ANNOTATION OF CHIMERA FUSION GenBank ID: EC549956 FASTA Head Gene (1) Alignment: SMG7 | OMIM: 610964 Tail Gene (2) Alignment: MYO1C | OMIM: 606538 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 9887 1 + 183554006 183554122 1 1 protein-coding 4641 17 - 1490501 1490535 0 0 protein-coding 116 hg38 Updated: 2019-03-25 Owner: ChiTaRS	SMG7 B1ALB4 D6R9J3 D6RAD0 E9PBK2 E9PD50 E9PEK3 Q6TV06 Q92540 XM_011510206.3	9..113 100.0%	+ 1	MYO1C A1L180 D3DTH7 F5H6E2 I3L204 I3L2C3 I3L3F5 I3L3Y6 I3L501 O00159 XM_024450768.1	82..115 96.6%	- 17	1 0 0	exon-intron

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