Result for the search of Gene Name/NCBI ID(s): 'MCM5'

Total of fusion sequences: 30 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	BF929196 ANNOTATION OF CHIMERA FUSION GenBank ID: BF929196 FASTA Head Gene (1) Alignment: MCM5 | OMIM: 602696 Tail Gene (2) Alignment: MCM5 | OMIM: 602696 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 4174 22 + 35421330 35423254 16 1 oncogene, protein-coding 4174 22 - 35423253 35423320 3 1 oncogene, protein-coding 233 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to MCM_N (PF14551, IPR027925) 104 32 130 8.8e-23 67.200 MCM N-terminal domain MCM_OB (PF17207) 126 136 273 7e-44 135.000 MCM OB domain MCM (PF00493, IPR001208, SM00350) 331 318 649 1.6e-133 430.900 MCM2/3/5 family Updated: 2019-02-20 Owner: ChiTaRS	MCM5 B1AHA9 B1AHB0 B1AHB1 B1AHB2 F8WFD7 P33992 XM_006724242.4	1..172 99.5%	+ 22	MCM5 B1AHA9 B1AHB0 B1AHB1 B1AHB2 F8WFD7 P33992 XM_006724242.4	166..233 100.0%	- 22	1 0 0	exon-exon	3HiC Hi-C contacts of chimeric junction Fusion Gene1 chromo- some1 junction start1 junction end1 Hi-C point1 Δ1 Gene2 chromo- some2 junction start2 junction end2 Hi-C point2 Δ2 Cell lines (Cell_ID,) PubMed(,s) 2 3 19 - - 32 - 8 25 - - 33 - 34 - BF929196 MCM5 22 35423248 35423254 35414007 9241 MCM5 22 35423253 35423259 35414007 9246 GM12878 (CVCL_7526) 25497547 BF929196 MCM5 22 35423248 35423254 35414007 9241 MCM5 22 35423253 35423259 35424007 748 GM12878 (CVCL_7526) 25497547 BF929196 MCM5 22 35423248 35423254 35424007 753 MCM5 22 35423253 35423259 35424007 748 GM12878 (CVCL_7526) 25497547
2 Homo Sapiens	AX184635 ANNOTATION OF CHIMERA FUSION GenBank ID: AX184635 FASTA Head Gene (1) Alignment: MCM5 | OMIM: 602696 Tail Gene (2) Alignment: HDAC2 | OMIM: 605164 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 4174 22 - 35441055 35441078 17 0 oncogene, protein-coding 3066 6 + 113943395 113944409 13 1 tumor suppressor, protein-coding 444 hg38 Updated: 2019-01-31 Owner: ChiTaRS	MCM5 B1AHA9 B1AHB0 B1AHB1 B1AHB2 F8WFD7 P33992 NM_006739.3	165..188 100.0%	- 22	HDAC2 B5MGH3 E5RFI6 E5RFP9 E5RG37 E5RGV4 E5RH52 E5RHE7 E5RJ04 E5RK19 H3BM24 Q92769 NR_033441.1	189..432 98.8%	+ 6	1 0 0	intron-exon
3 Homo Sapiens	AX187499 ANNOTATION OF CHIMERA FUSION GenBank ID: AX187499 FASTA Head Gene (1) Alignment: MCM5 | OMIM: 602696 Tail Gene (2) Alignment: HDAC2 | OMIM: 605164 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 4174 22 - 35441055 35441078 17 0 oncogene, protein-coding 3066 6 + 113943395 113945407 13 1 tumor suppressor, protein-coding 470 hg38 Updated: 2019-01-31 Owner: ChiTaRS	MCM5 B1AHA9 B1AHB0 B1AHB1 B1AHB2 F8WFD7 P33992 NM_006739.3	159..182 100.0%	- 22	HDAC2 B5MGH3 E5RFI6 E5RFP9 E5RG37 E5RGV4 E5RH52 E5RHE7 E5RJ04 E5RK19 H3BM24 Q92769 NR_033441.1	183..470 99.7%	+ 6	1 0 0	intron-exon
4 Homo Sapiens	AX186539 ANNOTATION OF CHIMERA FUSION GenBank ID: AX186539 FASTA Head Gene (1) Alignment: MCM5 | OMIM: 602696 Tail Gene (2) Alignment: MIGA1 | OMIM: 616773 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 4174 22 - 35441056 35441078 17 0 oncogene, protein-coding 374986 1 - 77847119 77847453 8 0 protein-coding 389 hg38 Updated: 2019-01-31 Owner: ChiTaRS	MCM5 B1AHA9 B1AHB0 B1AHB1 B1AHB2 F8WFD7 P33992 NM_006739.3	35..57 100.0%	- 22	MIGA1 A0A2R8YDC7 A0A2R8YE40 A0A2R8YF99 A0A2R8YFQ8 A0A2R8YGK2 B7ZLZ8 F8W7S1 Q8NAN2 XM_017001227.1	53..388 95.3%	- 1	1 0 0	intron-intron
5 Homo Sapiens	AX184734 ANNOTATION OF CHIMERA FUSION GenBank ID: AX184734 FASTA Head Gene (1) Alignment: MCM5 | OMIM: 602696 Tail Gene (2) Alignment: MIGA1 | OMIM: 616773 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 4174 22 - 35441056 35441078 17 0 oncogene, protein-coding 374986 1 - 77847119 77847453 8 0 protein-coding 372 hg38 Updated: 2019-01-30 Owner: ChiTaRS	MCM5 B1AHA9 B1AHB0 B1AHB1 B1AHB2 F8WFD7 P33992 NM_006739.3	18..40 100.0%	- 22	MIGA1 A0A2R8YDC7 A0A2R8YE40 A0A2R8YF99 A0A2R8YFQ8 A0A2R8YGK2 B7ZLZ8 F8W7S1 Q8NAN2 XM_017001227.1	36..371 95.3%	- 1	1 0 0	intron-intron
6 Homo Sapiens	AX187115 ANNOTATION OF CHIMERA FUSION GenBank ID: AX187115 FASTA Head Gene (1) Alignment: MAP3K20 | OMIM: 609479 Tail Gene (2) Alignment: MCM5 | OMIM: 602696 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 51776 2 + 173267370 173268007 20 1 protein-coding 4174 22 + 35441054 35441075 2 0 oncogene, protein-coding 736 hg38 Updated: 2019-01-30 Owner: ChiTaRS	MAP3K20 C9J3F7 D4Q8H0 Q9NYL2 NM_016653.2	19..657 99.0%	+ 2	MCM5 B1AHA9 B1AHB0 B1AHB1 B1AHB2 F8WFD7 P33992 XM_006724242.4	654..675 100.0%	+ 22	1 0 0	exon-intron
7 Homo Sapiens	AA533915 ANNOTATION OF CHIMERA FUSION GenBank ID: AA533915 FASTA Head Gene (1) Alignment: SQSTM1 | OMIM: 601530 Tail Gene (2) Alignment: MCM5 | OMIM: 602696 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 8878 5 + 179836845 179837254 1 1 oncogene, protein-coding 4174 22 + 35441057 35441077 0 0 oncogene, protein-coding 502 hg38 Updated: 2019-04-13 Owner: ChiTaRS	SQSTM1 C9J6J8 C9JRJ8 D6RBF1 E3W990 E7EMC7 E9PFW8 Q13501 NM_001142299.1	39..448 97.3%	+ 5	MCM5 B1AHA9 B1AHB0 B1AHB1 B1AHB2 F8WFD7 P33992 XM_006724242.4	447..467 100.0%	+ 22	1 0 0	exon-intron
8 Homo Sapiens	EC093907 ANNOTATION OF CHIMERA FUSION GenBank ID: EC093907 FASTA Head Gene (1) Alignment: MCM5 | OMIM: 602696 Tail Gene (2) Alignment: PMEPA1 | OMIM: 606564 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 4174 22 + 35431089 35431457 0 0 oncogene, protein-coding 56937 20 - 57651569 57651865 1 1 oncogene, protein-coding 423 hg38 Updated: 2019-04-13 Owner: ChiTaRS	MCM5 B1AHA9 B1AHB0 B1AHB1 B1AHB2 F8WFD7 P33992 XM_006724242.4	9..377 99.8%	+ 22	PMEPA1 A2A2F4 A2A2F5 Q5JY37 Q66K30 Q969W9 NM_199170.2	377..423 100.0%	- 20	1 0 0	intron-exon
9 Homo Sapiens	BI862457 ANNOTATION OF CHIMERA FUSION GenBank ID: BI862457 FASTA Head Gene (1) Alignment: NMRAL1 Tail Gene (2) Alignment: MCM5 | OMIM: 602696 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 57407 16 - 4461694 4463794 3 1 protein-coding 4174 22 - 35402312 35402344 0 0 oncogene, protein-coding 441 hg38 Updated: 2019-06-06 Owner: ChiTaRS	NMRAL1 A0A384P622 I3L0Y6 I3L1Q7 I3L1Y8 I3L2U0 I3L3I6 I3L3Z0 I3L543 Q9HBL8 NR_147845.1	1..401 100.0%	- 16	MCM5 B1AHA9 B1AHB0 B1AHB1 B1AHB2 F8WFD7 P33992 XM_006724242.4	402..434 97.0%	- 22	1 0 0	exon-intron
10 Homo Sapiens	AA888662 ANNOTATION OF CHIMERA FUSION GenBank ID: AA888662 FASTA Head Gene (1) Alignment: SMG5 | OMIM: 610962 Tail Gene (2) Alignment: MCM5 | OMIM: 602696 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 23381 1 - 156249224 156249494 1 1 protein-coding 4174 22 + 35441056 35441077 0 0 oncogene, protein-coding 303 hg38 Updated: 2019-04-14 Owner: ChiTaRS	SMG5 Q9UPR3 NM_001323616.1	8..277 98.9%	- 1	MCM5 B1AHA9 B1AHB0 B1AHB1 B1AHB2 F8WFD7 P33992 XM_006724242.4	277..298 100.0%	+ 22	1 0 0	exon-intron

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