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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'MARK2'

Total of fusion sequences: 73 (from 1493742 parsed EST/mRNAs. Last update 2019-12-05 16:32:10)

Organism Fusion:
Graphical View,
Annotation,
PPI network 		Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y) 		Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences		 Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript		 Start1..End1
Ident1% 		Strand1
Chrom1 		Name(s)2,
transcript		 Start2..End2
Ident2% 		Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: BC058106 FASTA
UniProtKB: Q80WG7 E3 ubiquitin-protein ligase Trim36 (EC 2.3.2.27) (Acrosome RBCC protein) (Haprin) (RING-type E3 ubiquitin transferase TRIM36) (Tripartite motif-containing protein 36)
Fusion Gene(s): Trim36
Head Gene (1) Alignment: Trim36 Tail Gene (2) Alignment: Mark2 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
2810518-46165845462125251011372819+72503037329482210 3944 mm10
Updated: 2019-06-16
Owner: ChiTaRS
NM_178872.4		1..3920
100.0%		-
18
XM_006526646.3		3683..3937
96.1%		+
19		1
0
0		exon-intron
2
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: BC002243 FASTA
UniProtKB: Q8BUY5 Complex I assembly factor TIMMDC1, mitochondrial (Translocase of inner mitochondrial membrane domain-containing protein 1) (TIMM domain containing-protein 1)
Fusion Gene(s): Timmdc1
Head Gene (1) Alignment: Timmdc1 Tail Gene (2) Alignment: Mark2 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
7691616-3849835138522625711372819+72088897329474210 1540 mm10
Updated: 2019-06-15
Owner: ChiTaRS
Timmdc1
Q8BUY5
NM_024273.2		1..1525
98.2%		-
16
XM_006526646.3		1094..1537
95.2%		+
19		1
0
0		exon-intron
3
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: BC043297 FASTA
UniProtKB: Q8K4Q6 Endonuclease 8-like 1 (EC 3.2.2.-) (EC 4.2.99.18) (DNA glycosylase/AP lyase Neil1) (DNA-(apurinic or apyrimidinic site) lyase Neil1) (Endonuclease VIII-like 1) (Nei homolog 1) (NEH1) (Nei-like protein 1)
Fusion Gene(s): Neil1 Nei1
Head Gene (1) Alignment: Neil1 Tail Gene (2) Alignment: Mark2 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
727749-57142798571482121011372819-7325378732561100 1857 mm10
Updated: 2019-06-05
Owner: ChiTaRS
XM_011242818.2		13..1844
100.0%		-
9
XM_006526646.3		1678..1852
95.0%		-
19		1
0
0		exon-intron
4
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: CK790146 FASTA
Head Gene (1) Alignment: Papss1 Tail Gene (2) Alignment: Mark2 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
239713+131642968131643669111372819-7324987732501000 823 mm10
Updated: 2019-06-11
Owner: ChiTaRS
NM_001289479.1		1..695
99.9%		+
3
XM_006526646.3		695..718
100.0%		-
19		2
2
4		exon-intron
5
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: CK793454 FASTA
Head Gene (1) Alignment: Papss1 Tail Gene (2) Alignment: Mark2 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
239713+131642964131643671111372819-7324988732501200 833 mm10
Updated: 2019-06-11
Owner: ChiTaRS
NM_001289479.1		14..716
100.0%		+
3
XM_006526646.3		713..737
100.0%		-
19		2
2
4		exon-intron
6
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: BI684041 FASTA
Head Gene (1) Alignment: Gm7964 Tail Gene (2) Alignment: Mark2 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
6661707+8375748883757803001372819-7324989732501500 326 mm10
Updated: 2019-06-05
Owner: ChiTaRS
Gm7964 1..315
99.4%		+
7
XM_006526646.3		300..326
96.3%		-
19		2
0
641		intron-intron
7
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: CF580696 FASTA
Head Gene (1) Alignment: Mark2 Tail Gene (2) Alignment: Gm7964 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1372819+73249897325015006661707-837568478375780300 921 mm10
Updated: 2019-06-12
Owner: ChiTaRS
XM_006526646.3		1..27
96.3%		+
19		 Gm7964 12..912
96.9%		-
7		2
0
641		intron-intron
8
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: CF581882 FASTA
Head Gene (1) Alignment: Rad50 Tail Gene (2) Alignment: Mark2 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1936011-536697155367601441protein-coding1372819+7327638732766000 395 mm10
Updated: 2019-06-12
Owner: ChiTaRS
NM_009012.2		14..376
100.0%		-
11
XM_006526646.3		369..391
100.0%		+
19		1
0
0		exon-intron
9
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: CF581883 FASTA
Head Gene (1) Alignment: Mark2 Tail Gene (2) Alignment: Rad50 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1372819-73276387327660001936011+536697155367601441protein-coding 395 mm10
Updated: 2019-06-12
Owner: ChiTaRS
XM_006526646.3		4..26
100.0%		-
19
NM_009012.2		19..381
99.8%		+
11		1
0
0		intron-exon
10
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: CK790389 FASTA
Head Gene (1) Alignment: Gm28437 Tail Gene (2) Alignment: Mark2 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1-2461318924613945001372819-7324987732501000 805 mm10
Updated: 2019-06-11
Owner: ChiTaRS
Gm28437 1..750
99.9%		-
1
XM_006526646.3		750..773
100.0%		-
19		1
0
0		intron-intron

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