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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'Ldlr'

Total of fusion sequences: 3 (from 1493742 parsed EST/mRNAs. Last update 2019-12-11 12:04:16)

Organism Fusion:
Graphical View,
Annotation,
PPI network
Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y)
Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences
Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript
Start1..End1
Ident1%
Strand1
Chrom1
Name(s)2,
transcript
Start2..End2
Ident2%
Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Mus musculus

NM_027727.2
1..22
100.0%
+
18

NM_010700.3
16..846
98.3%
-
9
1
0
0
intron-exon
2
Mus musculus
Gm44502
A0A2R8VJW3

NR_004843.2
1..4296
100.0%
-
15

NM_010700.3
4276..4312
96.6%
-
9
1
0
0
exon-intron
3
Mus musculus

NM_198937.2
45..380
98.9%
-
17

NM_010700.3
167..404
96.3%
+
9
1
0
0
exon-intron

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