Result for the search of Gene Name/NCBI ID(s): 'LAMA5'

Total of fusion sequences: 10 (from 1,393,046 parsed EST/mRNAs. Last update 2019-09-04)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	ChimerDB CN391244 ANNOTATION OF CHIMERA FUSION GenBank ID: CN391244 FASTA Head Gene (1) Alignment: H19 | OMIM: 103280 Tail Gene (2) Alignment: LAMA5 | OMIM: 601033 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 283120 11 - 1997641 1997778 5 1 tumor suppressor 3911 20 - 62309463 62310201 80 1 protein-coding 384 hg38 Updated: 2019-02-21 Owner: ChiTaRS	H19 NR_002196.2	1..137 100.0%	- 11	LAMA5 A0A087WYH7 H7C5J6 L8EAG2 O15230 NM_005560.4	134..384 100.0%	- 20	1 0 0	exon-exon
2 Homo Sapiens	BQ694937 ANNOTATION OF CHIMERA FUSION GenBank ID: BQ694937 FASTA Head Gene (1) Alignment: PTPRA | OMIM: 176884 Tail Gene (2) Alignment: LAMA5 | OMIM: 601033 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 5786 20 - 3008924 3009067 15 0 protein-coding 3911 20 - 62309347 62310191 80 1 protein-coding 503 hg38 Updated: 2019-02-21 Owner: ChiTaRS	PTPRA A0A1S5UZ22 P18433 Q5JWG0 Q5JWG2 Q5JWG3 NM_002836.3	1..143 100.0%	- 20	LAMA5 A0A087WYH7 H7C5J6 L8EAG2 O15230 NM_005560.4	140..496 100.0%	- 20	1 0 0	intron-exon	2HiC Hi-C contacts of chimeric junction Fusion Gene1 chromosome1 junction start1 junction end1 Hi-C point1 Δ1 Gene2 chromosome2 junction start2 junction end2 Hi-C point2 Δ2 Cell lines (Cellosaurus ID) 2 3 19 - - 32 - 8 25 - - 33 - 34 BQ694937 PTPRA 20 3009064 3009067 2999354 9710 LAMA5 20 62309347 62309350 62314944 5594 GM12878 (CVCL_7526) BQ694937 PTPRA 20 3009064 3009067 3009354 287 LAMA5 20 62309347 62309350 62314944 5594 GM12878 (CVCL_7526)
3 Homo Sapiens	EC569546 ANNOTATION OF CHIMERA FUSION GenBank ID: EC569546 FASTA Head Gene (1) Alignment: LAMA5 | OMIM: 601033 Tail Gene (2) Alignment: MTATP6P1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 3911 20 - 62353207 62353250 1 1 protein-coding 106480796 1 + 633975 634043 0 0 pseudo 103 hg38 Updated: 2019-03-21 Owner: ChiTaRS	LAMA5 A0A087WYH7 H7C5J6 L8EAG2 O15230 XM_006723796.3	1..44 100.0%	- 20	MTATP6P1	34..103 95.7%	+ 1	1 0 0	exon-intron
4 Homo Sapiens	EC510621 ANNOTATION OF CHIMERA FUSION GenBank ID: EC510621 FASTA Head Gene (1) Alignment: LAMA5 | OMIM: 601033 Tail Gene (2) Alignment: MTATP6P1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 3911 20 - 62353207 62353249 1 1 protein-coding 106480796 1 + 633975 634043 0 0 pseudo 102 hg38 Updated: 2019-04-08 Owner: ChiTaRS	LAMA5 A0A087WYH7 H7C5J6 L8EAG2 O15230 XM_006723796.3	1..43 100.0%	- 20	MTATP6P1	33..102 95.7%	+ 1	1 0 0	exon-intron
5 Homo Sapiens	EC532905 ANNOTATION OF CHIMERA FUSION GenBank ID: EC532905 FASTA Head Gene (1) Alignment: LAMA5 | OMIM: 601033 Tail Gene (2) Alignment: LINC01036 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 3911 20 + 62318321 62318380 0 0 protein-coding 104169671 1 - 187146640 187146890 0 0 ncRNA 127 hg38 Updated: 2019-04-05 Owner: ChiTaRS	LAMA5 A0A087WYH7 H7C5J6 L8EAG2 O15230 XM_006723796.3	1..56 100.0%	+ 20	LINC01036 NR_126347.1	45..118 95.4%	- 1	1 0 0	intron-intron
6 Homo Sapiens	EC445410 ANNOTATION OF CHIMERA FUSION GenBank ID: EC445410 FASTA Head Gene (1) Alignment: LAMA5 | OMIM: 601033 Tail Gene (2) Alignment: LOC100505715 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 3911 20 + 62318321 62318408 0 0 protein-coding 100505715 19 + 43895810 43895889 0 0 ncRNA 135 hg38 Updated: 2019-04-14 Owner: ChiTaRS	LAMA5 A0A087WYH7 H7C5J6 L8EAG2 O15230 XM_006723796.3	18..91 95.5%	+ 20	LOC100505715 NR_038334.1	58..133 95.7%	+ 19	1 0 0	intron-intron
7 Homo Sapiens	AA612625 ANNOTATION OF CHIMERA FUSION GenBank ID: AA612625 FASTA Head Gene (1) Alignment: LAMA5 | OMIM: 601033 Tail Gene (2) Alignment: ADRM1 | OMIM: 610650 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 3911 20 - 62309134 62309138 1 1 protein-coding 11047 20 - 62308085 62308862 3 1 protein-coding 412 hg38 Updated: 2019-04-14 Owner: ChiTaRS	LAMA5 A0A087WYH7 H7C5J6 L8EAG2 O15230 XM_006723796.3	1..5 99.3%	- 20	ADRM1 A0A087WUX6 A0A087WX59 Q16186 XM_024451818.1	6..410 99.3%	- 20	1 0 0	exon-exon
8 Homo Sapiens	EC556353 ANNOTATION OF CHIMERA FUSION GenBank ID: EC556353 FASTA Head Gene (1) Alignment: RBFOX1 | OMIM: 605104 Tail Gene (2) Alignment: LAMA5 | OMIM: 601033 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 54715 16 - 7281836 7281870 0 0 protein-coding 3911 20 + 62311047 62311204 2 1 protein-coding 110 hg38 Updated: 2019-03-25 Owner: ChiTaRS	RBFOX1 A0A087X2B1 A0A286YEU2 A0A286YFF2 B7Z1U7 B7ZLH9 F5H0M1 F8VR27 F8VRS4 F8VZG9 F8VZY7 H3BM62 I3L1D4 J3KNW3 Q9NWB1 X5D7T5 X5DNY3 X5DP44 XM_017023318.2	2..28 96.3%	- 16	LAMA5 A0A087WYH7 H7C5J6 L8EAG2 O15230 XM_006723796.3	26..110 100.0%	+ 20	1 0 0	intron-exon
9 Homo Sapiens	AX395843 ANNOTATION OF CHIMERA FUSION GenBank ID: AX395843 FASTA Head Gene (1) Alignment: LAMA5 | OMIM: 601033 Tail Gene (2) Alignment: LOC105379228 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 3911 20 - 62309065 62309297 1 1 protein-coding 105379228 8 - 9352121 9352167 2 0 ncRNA 258 hg38 Updated: 2019-02-17 Owner: ChiTaRS	LAMA5 A0A087WYH7 H7C5J6 L8EAG2 O15230 NM_005560.4	1..233 100.0%	- 20	LOC105379228 XR_948935.2	225..257 100.0%	- 8	1 0 0	exon-intron
10 Homo Sapiens	AW206069 ANNOTATION OF CHIMERA FUSION GenBank ID: AW206069 FASTA Head Gene (1) Alignment: GSTP1 | OMIM: 134660 Tail Gene (2) Alignment: LAMA5 | OMIM: 601033 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 2950 11 - 67586252 67586653 7 1 tumor suppressor 3911 20 + 62325513 62325592 41 1 protein-coding 333 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Laminin_B (PF00052, IPR000034) 132 251 323 1.6e-16 46.600 Laminin B (Domain IV) Laminin_EGF (PF00053, IPR002049, SM00180) 49 319 354 6.8e-08 18.900 Laminin EGF domain Laminin_I (PF06008, IPR009254) 259 686 945 1e-87 280.200 Laminin Domain I CLZ (PF16526, IPR032406) 71 900 970 0.0071 3.000 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF1664 (PF07889, IPR012458) 124 1078 1165 2.1e-05 10.700 Protein of unknown function (DUF1664) Laminin_II (PF06009, IPR010307) 138 1126 1256 4.5e-44 136.000 Laminin Domain II Laminin_G_2 (PF02210, IPR001791) 126 1271 1402 1.5e-10 27.900 Laminin G domain Updated: 2019-02-20 Owner: ChiTaRS	GSTP1 A0A087X243 A0A087X2E9 A0A0M4UT83 A0A0M5MRY8 A0A2P1FDF0 A0A2R8Y5E5 A0A3B6XSH2 A8MX94 B2C310 C7DJS1 C7DJS2 P09211 Q5D6A5 V9HWE9 NM_000852.3	17..246 100.0%	- 11	LAMA5 A0A087WYH7 H7C5J6 L8EAG2 O15230 NM_005560.4	244..323 98.8%	+ 20	1 0 0	exon-exon

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