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Rank: Junction Consistence: Sense-ANTIsense

Read-through Chimeras Mass-spec Hits Breakpoints RNAseq evidence
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search: Gene Name/NCBI ID(s): 'LAMA5'

Total of fusion sequences: 4 (from 393,531 parsed EST/mRNAs. Last update 2018-11-20)

Organism Fusion:
Graphical View,
Annotation, PPI 		Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y) 		RNAseq,
Mass-spec
evidences		 Cancer
Breakpoint,
PubMed, iHOP
reference
Name(s)1 Start1..End1
Ident1% 		Strand1
Chrom1 		Name(s)2 Start2..End2
Ident2% 		Strand2
Chrom2
1234,5,67,1789,10,1112,2513,14,151617
Homo Sapiens ChimerDB

ANNOTATION OF CHIMERA FUSION

GenBank ID: CN391244 FASTA
Head Gene (1) Alignment: H19 | OMIM: 103280 Tail Gene (2) Alignment: LAMA5 | OMIM: 601033 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
28312011-20188712019008NANAtumor suppressor391120-6088451960885257NANAprotein-coding NA hg19
Updated: 2012-12-12
Owner: ChiTaRS
H19 1..137
100.0%		-
11		 134..384
100.0%		-
20		1
0
0
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: BQ694937 FASTA
Head Gene (1) Alignment: PTPRA | OMIM: 176884 Tail Gene (2) Alignment: LAMA5 | OMIM: 601033 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
578620-29895702989713NANAprotein-coding391120-6088440360885247NANAprotein-coding NA hg19
Updated: 2012-12-12
Owner: ChiTaRS
1..143
100.0%		-
20		 140..496
100.0%		-
20		1
0
0
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: AX395843 FASTA
Head Gene (1) Alignment: LAMA5 | OMIM: 601033 Tail Gene (2) Alignment: RNF14 | OMIM: 605675 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
391120-623090656230929710protein-coding96045-14198274214198276110protein-coding 258 hg38
Updated: 2018-10-23
Owner: ChiTaRS
1..233
100.0%		-
20		 224..243
100.0%		-
5		1
0
0
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: AW206069 FASTA
Head Gene (1) Alignment: GSTP1 | OMIM: 134660 Tail Gene (2) Alignment: LAMA5 | OMIM: 601033 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
295011-6735372367354124NANAtumor suppressor391120+6090056960900648NANAprotein-coding NA hg19

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
Laminin_B (PF00052, IPR000034) 132 251 323 1.6e-16 46.600 Laminin B (Domain IV)
Laminin_EGF (PF00053, IPR002049, SM00180) 49 319 354 6.8e-08 18.900 Laminin EGF domain
Laminin_I (PF06008, IPR009254) 259 686 945 1e-87 280.200 Laminin Domain I
CLZ (PF16526, IPR032406) 71 900 970 0.0071 3.000 C-terminal leucine zipper domain of cyclic nucleotide-gated channels
DUF1664 (PF07889, IPR012458) 124 1078 1165 2.1e-05 10.700 Protein of unknown function (DUF1664)
Laminin_II (PF06009, IPR010307) 138 1126 1256 4.5e-44 136.000 Laminin Domain II
Laminin_G_2 (PF02210, IPR001791) 126 1271 1402 1.5e-10 27.900 Laminin G domain
Updated: 2012-12-12
Owner: ChiTaRS
17..246
100.0%		-
11		 244..323
98.8%		+
20		1
0
0