Result for the search of Gene Name/NCBI ID(s): 'Kctd16'

Total of fusion sequences: 5 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Mus musculus	CN841068 ANNOTATION OF CHIMERA FUSION GenBank ID: CN841068 FASTA Head Gene (1) Alignment: Kctd16 Tail Gene (2) Alignment: Nt5dc3 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 383348 18 + 40530738 40531173 1 1 103466 10 + 86803297 86803341 0 0 538 mm10 Updated: 2019-06-11 Owner: ChiTaRS	Kctd16 A0A494BB17 Q5DTY9 Q9D6G3 XM_017317939.1	4..439 100.0%	+ 18	Nt5dc3 Q3UHB1 Q692V2 Q8BUP4 NM_175331.3	422..450 96.3%	+ 10	1 0 0	exon-intron
2 Mus musculus	CO797600 ANNOTATION OF CHIMERA FUSION GenBank ID: CO797600 FASTA Head Gene (1) Alignment: Lsm3 Tail Gene (2) Alignment: Kctd16 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 67678 6 + 91517044 91522622 3 1 383348 18 + 40346306 40346330 0 0 832 mm10 Updated: 2019-06-11 Owner: ChiTaRS	Lsm3 P62311 NM_026309.2	15..607 100.0%	+ 6	Kctd16 A0A494BB17 Q5DTY9 Q9D6G3 XM_017317939.1	594..616 100.0%	+ 18	1 0 0	exon-intron
3 Mus musculus	CF585430 ANNOTATION OF CHIMERA FUSION GenBank ID: CF585430 FASTA Head Gene (1) Alignment: Kctd16 Tail Gene (2) Alignment: Gtf2i Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 383348 18 - 40476437 40476480 0 0 14886 5 + 134237834 134238715 1 1 protein-coding 917 mm10 Updated: 2019-06-12 Owner: ChiTaRS	Kctd16 A0A494BB17 Q5DTY9 Q9D6G3 XM_017317939.1	1..37 96.7%	- 18	Gtf2i G3UWP6 G3UWV2 G3UX27 G3UY14 G3UYD0 G3UYD7 G3UYJ6 G3UZU4 Q3UHU8 Q9ESZ8 XR_001784611.1	16..900 99.3%	+ 5	1 0 0	intron-exon
4 Mus musculus	CF584081 ANNOTATION OF CHIMERA FUSION GenBank ID: CF584081 FASTA Head Gene (1) Alignment: Kctd16 Tail Gene (2) Alignment: Ciz1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 383348 18 - 40476457 40476477 0 0 68379 2 - 32376010 32378303 5 1 952 mm10 Updated: 2019-06-12 Owner: ChiTaRS	Kctd16 A0A494BB17 Q5DTY9 Q9D6G3 XM_017317939.1	2..22 100.0%	- 18	Ciz1 A0A0A0MQJ7 A0A0A6YVQ0 A2AN61 F6S5B6 F6XWQ4 F7AT58 F7BM53 F7D5G9 Q3TMV1 Q3TXU6 Q3UUV0 Q6GQU3 Q70KX6 Q8BIT2 Q8VEH2 Q9CUW6 NM_001252536.1	16..824 99.6%	- 2	1 0 0	intron-exon
5 Mus musculus	CK021716 ANNOTATION OF CHIMERA FUSION GenBank ID: CK021716 FASTA Head Gene (1) Alignment: Rere Tail Gene (2) Alignment: Kctd16 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 68703 4 - 150565385 150565618 0 0 protein-coding 383348 18 + 40186880 40364714 2 0 903 mm10 Updated: 2019-06-11 Owner: ChiTaRS	Rere A0A1W2P787 A2A7T1 A2A7T3 B1AS11 B7ZND6 Q2NLC0 Q80TZ9 XM_006539138.2	1..234 100.0%	- 4	Kctd16 A0A494BB17 Q5DTY9 Q9D6G3 XM_017317939.1	8..588 95.9%	+ 18	1 0 0	intron-intron

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