Result for the search of Gene Name/NCBI ID(s): 'Hnrnpl'

Total of fusion sequences: 14 (from 1493742 parsed EST/mRNAs. Last update 2019-12-05 16:32:10)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	ChimerDB AL526231 ANNOTATION OF CHIMERA FUSION GenBank ID: AL526231 FASTA Head Gene (1) Alignment: HNRNPL | OMIM: 603083 Tail Gene (2) Alignment: EMC8 | OMIM: 604886 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 3191 19 - 38849768 38849911 13 1 protein-coding 10328 16 - 85779666 85799397 5 1 protein-coding 917 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to UPF0172 (PF03665, IPR005366) 191 102 294 5.5e-51 159.500 Uncharacterised protein family (UPF0172) Updated: 2019-02-02 Owner: ChiTaRS	HNRNPL A0A3B3ITJ4 B4DVF8 M0QXS5 M0QYL7 M0R1W6 P14866 Q6NTA2 NM_001533.2	1..145 98.0%	- 19	EMC8 M0R1B0 O43402 Q53Y03 XM_017022867.1	141..917 99.4%	- 16	1 0 0	exon-exon
2 Homo Sapiens	AI800860 ANNOTATION OF CHIMERA FUSION GenBank ID: AI800860 FASTA Head Gene (1) Alignment: HNRNPL | OMIM: 603083 Tail Gene (2) Alignment: HNRNPL | OMIM: 603083 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 3191 19 + 38842089 38842210 7 0 protein-coding 3191 19 + 38841158 38841461 7 0 protein-coding 421 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Dscam_C (PF12355, IPR021012) 118 583 692 1.7e-07 18.500 Down syndrome cell adhesion molecule C terminal RRM_5 (PF13893) 125 620 744 2.9e-54 168.300 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RRM_1 (PF00076, IPR000504, SM00361) 70 770 835 0.004 3.300 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Updated: 2019-02-20 Owner: ChiTaRS	HNRNPL A0A3B3ITJ4 B4DVF8 M0QXS5 M0QYL7 M0R1W6 P14866 Q6NTA2 NM_001005335.1	1..124 96.8%	+ 19	HNRNPL A0A3B3ITJ4 B4DVF8 M0QXS5 M0QYL7 M0R1W6 P14866 Q6NTA2 XR_243927.2	118..421 100.0%	+ 19	0 1291 621	intron-intron
3 Homo Sapiens	AA568302 ANNOTATION OF CHIMERA FUSION GenBank ID: AA568302 FASTA Head Gene (1) Alignment: HNRNPL | OMIM: 603083 Tail Gene (2) Alignment: HNRNPL | OMIM: 603083 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 3191 19 - 38843498 38843859 1 1 protein-coding 3191 19 + 38843482 38843514 0 0 protein-coding 401 hg38 Updated: 2019-04-13 Owner: ChiTaRS	HNRNPL A0A3B3ITJ4 B4DVF8 M0QXS5 M0QYL7 M0R1W6 P14866 Q6NTA2 NM_001533.2	3..366 98.4%	- 19	HNRNPL A0A3B3ITJ4 B4DVF8 M0QXS5 M0QYL7 M0R1W6 P14866 Q6NTA2 NM_001533.2	363..395 100.0%	+ 19	2 762 788	exon-intron
4 Homo Sapiens	BQ343301 ANNOTATION OF CHIMERA FUSION GenBank ID: BQ343301 FASTA Head Gene (1) Alignment: HNRNPL | OMIM: 603083 Tail Gene (2) Alignment: HNRNPL | OMIM: 603083 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 3191 19 - 38842710 38842873 7 0 protein-coding 3191 19 + 38842690 38842752 6 0 protein-coding 247 hg38 Updated: 2019-02-02 Owner: ChiTaRS	HNRNPL A0A3B3ITJ4 B4DVF8 M0QXS5 M0QYL7 M0R1W6 P14866 Q6NTA2 NM_001005335.1	26..190 95.2%	- 19	HNRNPL A0A3B3ITJ4 B4DVF8 M0QXS5 M0QYL7 M0R1W6 P14866 Q6NTA2 NM_001005335.1	185..247 100.0%	+ 19	2 762 788	intron-intron
5 Homo Sapiens	DN914214 ANNOTATION OF CHIMERA FUSION GenBank ID: DN914214 FASTA Head Gene (1) Alignment: HNRNPL | OMIM: 603083 Tail Gene (2) Alignment: HNRNPLP1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 3191 19 - 38837384 38838514 4 1 protein-coding 442157 6 - 7481140 7481383 1 1 pseudo 288 hg38 Updated: 2019-01-31 Owner: ChiTaRS	HNRNPL A0A3B3ITJ4 B4DVF8 M0QXS5 M0QYL7 M0R1W6 P14866 Q6NTA2 NM_001005335.1	1..272 99.7%	- 19	HNRNPLP1	38..284 95.0%	- 6	2 476 985	exon-exon
6 Homo Sapiens	BI496535 ANNOTATION OF CHIMERA FUSION GenBank ID: BI496535 FASTA Head Gene (1) Alignment: HNRNPLP1 Tail Gene (2) Alignment: HNRNPL | OMIM: 603083 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 442157 6 + 7480453 7480907 1 1 pseudo 3191 19 + 38836399 38836532 13 1 protein-coding 146 hg38 Updated: 2019-01-31 Owner: ChiTaRS	HNRNPLP1	1..126 98.5%	+ 6	HNRNPL A0A3B3ITJ4 B4DVF8 M0QXS5 M0QYL7 M0R1W6 P14866 Q6NTA2 NM_001005335.1	10..142 99.3%	+ 19	2 476 985	exon-exon
7 Homo Sapiens	CF122825 ANNOTATION OF CHIMERA FUSION GenBank ID: CF122825 FASTA Head Gene (1) Alignment: HNRNPLP2 Tail Gene (2) Alignment: HNRNPL | OMIM: 603083 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 644390 15 - 34489810 34490416 1 1 pseudo 3191 19 - 38840459 38846093 6 1 protein-coding 636 hg38 Updated: 2019-04-13 Owner: ChiTaRS	HNRNPLP2	8..615 97.9%	- 15	HNRNPL A0A3B3ITJ4 B4DVF8 M0QXS5 M0QYL7 M0R1W6 P14866 Q6NTA2 XR_243927.2	39..636 100.0%	- 19	1 0 0	exon-exon
8 Homo Sapiens	BF373340 ANNOTATION OF CHIMERA FUSION GenBank ID: BF373340 FASTA Head Gene (1) Alignment: LOC105378740 Tail Gene (2) Alignment: HNRNPL | OMIM: 603083 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 105378740 1 + 55832689 55832712 0 0 ncRNA 3191 19 - 38841934 38842080 0 0 protein-coding 294 hg38 Updated: 2019-04-10 Owner: ChiTaRS	LOC105378740 XR_947380.2	139..162 100.0%	+ 1	HNRNPL A0A3B3ITJ4 B4DVF8 M0QXS5 M0QYL7 M0R1W6 P14866 Q6NTA2 NM_001533.2	148..294 100.0%	- 19	1 0 0	intron-intron
9 Homo Sapiens	DN914215 ANNOTATION OF CHIMERA FUSION GenBank ID: DN914215 FASTA Head Gene (1) Alignment: PIK3CB | OMIM: 602925 Tail Gene (2) Alignment: HNRNPL | OMIM: 603083 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 5291 3 + 138826485 138826504 24 0 oncogene, protein-coding 3191 19 + 38837384 38838546 12 1 protein-coding 320 hg38 Updated: 2019-02-17 Owner: ChiTaRS	PIK3CB C9J345 C9JNF6 C9JYX0 F8WDJ8 H0Y871 H7C527 H7C565 H7C5C3 P42338 Q68DL0 Q6PJ60 XM_011512895.2	7..26 100.0%	+ 3	HNRNPL A0A3B3ITJ4 B4DVF8 M0QXS5 M0QYL7 M0R1W6 P14866 Q6NTA2 NM_001005335.1	17..320 100.0%	+ 19	1 0 0	intron-exon
10 Homo Sapiens	BG284239 ANNOTATION OF CHIMERA FUSION GenBank ID: BG284239 FASTA Head Gene (1) Alignment: HNRNPL | OMIM: 603083 Tail Gene (2) Alignment: RASSF5 | OMIM: 607020 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 3191 19 - 38836712 38836780 1 1 protein-coding 83593 1 + 206589157 206589272 1 1 oncogene, tumor suppressor 398 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to RRM_1 (PF00076, IPR000504, SM00361) 70 104 163 6.4e-09 21.900 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Dscam_C (PF12355, IPR021012) 118 307 428 3.5e-08 20.700 Down syndrome cell adhesion molecule C terminal RRM_5 (PF13893) 125 356 480 1.5e-54 169.200 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Updated: 2019-02-20 Owner: ChiTaRS	HNRNPL A0A3B3ITJ4 B4DVF8 M0QXS5 M0QYL7 M0R1W6 P14866 Q6NTA2 NM_001005335.1	10..78 97.1%	- 19	RASSF5 A0A075B763 A0A1B0GTG4 Q8TEK8 Q8WWW0 NM_182663.3	73..186 99.2%	+ 1	1 0 0	exon-exon

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