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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'HSP90AA1'

Total of fusion sequences: 7 (from 1493742 parsed EST/mRNAs. Last update 2019-12-05 16:32:10)

Organism Fusion:
Graphical View,
Annotation,
PPI network 		Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y) 		Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences		 Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript		 Start1..End1
Ident1% 		Strand1
Chrom1 		Name(s)2,
transcript		 Start2..End2
Ident2% 		Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: J04633 FASTA
UniProtKB: P07901 Heat shock protein HSP 90-alpha (Heat shock 86 kDa) (HSP 86) (HSP86) (Tumor-specific transplantation 86 kDa antigen) (TSTA)
Fusion Gene(s): Hsp90aa1 Hsp86 Hsp86-1 Hspca
Head Gene (1) Alignment: Gm46595 Tail Gene (2) Alignment: Hsp90aa1 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
10816833917+7096365870963833001551912-110691031110696282110 2975 mm10
Updated: 2019-06-16
Owner: ChiTaRS
Gm46595
XR_001782184.1		54..229
97.2%		+
17
NM_010480.5		230..2973
100.0%		-
12		1
0
0		intron-intron
2
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: BC049124 FASTA
UniProtKB: Q80Y52 Heat shock protein 90, alpha (Cytosolic), class A member 1 (MCG14932, isoform CRA_b)
Fusion Gene(s): Hsp90aa1 Hspca mCG_14932
Head Gene (1) Alignment: Hsp90aa1 Tail Gene (2) Alignment: Ssh2 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1551912-11069103111069639011623786011+772934387729642600 2869 mm10
Updated: 2019-06-15
Owner: ChiTaRS
NM_010480.5		1..2850
100.0%		-
12
XM_006533227.3		81..2869
99.5%		+
11		1
0
0		exon-intron
3
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: DV075403 FASTA
Head Gene (1) Alignment: Hsp90aa1 Tail Gene (2) Alignment: Amt Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1551912-110692703110694055514344379-10830168310830172211 993 mm10
Updated: 2019-06-16
Owner: ChiTaRS
NM_010480.5		29..735
99.3%		-
12
XM_011242894.2		733..772
100.0%		-
9		1
0
0		exon-exon
4
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: DV075706 FASTA
Head Gene (1) Alignment: Hsp90aa1 Tail Gene (2) Alignment: Gm15127 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1551912-11069269911069337731434866X-14867300714867303000 1116 mm10
Updated: 2019-06-16
Owner: ChiTaRS
NM_010480.5		41..430
98.7%		-
12
NM_001114400.2		431..454
95.9%		-
X		1
0
0		exon-intron
5
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: DV075523 FASTA
Head Gene (1) Alignment: Hsp90aa1 Tail Gene (2) Alignment: Ubiad1 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1551912-11069418311069465421717074-14844065414844090700protein-coding 903 mm10
Updated: 2019-06-16
Owner: ChiTaRS
NM_010480.5		41..285
99.6%		-
12		 Ubiad1
Q9DC60
NM_027873.2		174..357
96.7%		-
4		1
0
0		exon-intron
6
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: CN841810 FASTA
Head Gene (1) Alignment: Lyar Tail Gene (2) Alignment: Hsp90aa1 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
170895+382305993823070111protein-coding1551912-11069417411069463021 338 mm10
Updated: 2019-06-11
Owner: ChiTaRS
XM_006503763.1		2..104
100.0%		+
5
NM_010480.5		82..307
98.2%		-
12		1
0
0		exon-exon
7
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: D76767 FASTA
Head Gene (1) Alignment: Acbd3 Tail Gene (2) Alignment: Hsp90aa1 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1707601+18073445218073451711protein-coding1551912-11069416011069429011 167 mm10
Updated: 2019-06-05
Owner: ChiTaRS
NM_133225.3		1..65
97.0%		+
1
NM_010480.5		40..167
100.0%		-
12		1
0
0		exon-exon

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