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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec Hits Read-through Chimeras Breakpoints RNAseq evidence
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search: Gene Name/NCBI ID(s): 'HSP90AA1'

Total of fusion sequences: 7 (from 1,389,894 parsed EST/mRNAs. Last update 2019-07-07)

Organism Fusion:
Graphical View,
Annotation,
PPI network 		Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y) 		Fusion type Hi-C,
RNAseq,
Mass-spec
evidences		 Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript		 Start1..End1
Ident1% 		Strand1
Chrom1 		Name(s)2,
transcript		 Start2..End2
Ident2% 		Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15-1617
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: DV075403 FASTA
Head Gene (1) Alignment: Hsp90aa1 Tail Gene (2) Alignment: Amt Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1551912-110692703110694055514344379-10830168310830172211 993 mm10
Updated: 2019-06-16
Owner: ChiTaRS
Hsp90aa1
NM_010480.5		29..735
99.3%		-
12		 Amt
XM_011242894.2		733..772
100.0%		-
9		1
0
0		exon-exon
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: DV075706 FASTA
Head Gene (1) Alignment: Hsp90aa1 Tail Gene (2) Alignment: Gm15127 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1551912-11069269911069337731434866X-14867300714867303000 1116 mm10
Updated: 2019-06-16
Owner: ChiTaRS
Hsp90aa1
NM_010480.5		41..430
98.7%		-
12		 Gm15127
NM_001114400.2		431..454
95.9%		-
X		1
0
0		exon-intron
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: J04633 FASTA
UniProtKB: P07901 Heat shock protein HSP 90-alpha (Heat shock 86 kDa) (HSP 86) (HSP86) (Tumor-specific transplantation 86 kDa antigen) (TSTA)
Fusion Gene(s): Hsp90aa1 Hsp86 Hsp86-1 Hspca
Head Gene (1) Alignment: Gm46595 Tail Gene (2) Alignment: Hsp90aa1 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
10816833917+7096365870963833001551912-110691031110696282110 2975 mm10
Updated: 2019-06-16
Owner: ChiTaRS
Gm46595
XR_001782184.1		54..229
97.2%		+
17		 Hsp90aa1
NM_010480.5		230..2973
100.0%		-
12		1
0
0		intron-intron
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: DV075523 FASTA
Head Gene (1) Alignment: Hsp90aa1 Tail Gene (2) Alignment: Ubiad1 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1551912-11069418311069465421717074-14844065414844090700protein-coding 903 mm10
Updated: 2019-06-16
Owner: ChiTaRS
Hsp90aa1
NM_010480.5		41..285
99.6%		-
12		 Ubiad1
Q9DC60
NM_027873.2		174..357
96.7%		-
4		1
0
0		exon-intron
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: CN841810 FASTA
Head Gene (1) Alignment: Lyar Tail Gene (2) Alignment: Hsp90aa1 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
170895+382305993823070111protein-coding1551912-11069417411069463021 338 mm10
Updated: 2019-06-11
Owner: ChiTaRS
XM_006503763.1		2..104
100.0%		+
5		 Hsp90aa1
NM_010480.5		82..307
98.2%		-
12		1
0
0		exon-exon
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: BC049124 FASTA
UniProtKB: Q80Y52 Heat shock protein 90, alpha (Cytosolic), class A member 1 (MCG14932, isoform CRA_b)
Fusion Gene(s): Hsp90aa1 Hspca mCG_14932
Head Gene (1) Alignment: Hsp90aa1 Tail Gene (2) Alignment: Ssh2 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1551912-11069103111069639011623786011+772934387729642600 2869 mm10
Updated: 2019-06-15
Owner: ChiTaRS
Hsp90aa1
NM_010480.5		1..2850
100.0%		-
12		 Ssh2
XM_006533227.3		81..2869
99.5%		+
11		1
0
0		exon-intron
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: D76767 FASTA
Head Gene (1) Alignment: Acbd3 Tail Gene (2) Alignment: Hsp90aa1 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1707601+18073445218073451711protein-coding1551912-11069416011069429011 167 mm10
Updated: 2019-06-05
Owner: ChiTaRS
NM_133225.3		1..65
97.0%		+
1		 Hsp90aa1
NM_010480.5		40..167
100.0%		-
12		1
0
0		exon-exon