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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'HNRNPD'

Total of fusion sequences: 24 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism Fusion:
Graphical View,
Annotation,
PPI network 		Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y) 		Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences		 Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript		 Start1..End1
Ident1% 		Strand1
Chrom1 		Name(s)2,
transcript		 Start2..End2
Ident2% 		Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Homo Sapiens		SplGraphs

ANNOTATION OF CHIMERA FUSION

GenBank ID: DB050538 FASTA
Head Gene (1) Alignment: HNRNPD | OMIM: 601324 Tail Gene (2) Alignment: ELL | OMIM: 600284 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
31844-823739008237399591oncogene,
protein-coding		817819-1844401518444489131oncogene,
protein-coding		 567 hg38
Updated: 2019-02-21
Owner: ChiTaRS
NM_031370.2		1..96
100.0%		-
4
XM_017027335.1		93..567
100.0%		-
19		1
0
0		exon-exon
2
Homo Sapiens		SplGraphs

ANNOTATION OF CHIMERA FUSION

GenBank ID: DA569517 FASTA
Head Gene (1) Alignment: RILPL2 | OMIM: 614093 Tail Gene (2) Alignment: HNRNPD | OMIM: 601324 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
19638312-12342308612343647041protein-coding31844-823595788237347331oncogene,
protein-coding		 761 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
RRM_7 (PF16367, IPR000504) 94 173 200 0.041 0.400 RNA recognition motif
RRM_1 (PF00076, IPR000504, SM00361) 70 266 335 3.7e-21 61.100 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
NID (PF07292, IPR009909) 90 393 440 3.1e-06 14.100 Nmi/IFP 35 domain (NID)
Updated: 2019-02-21
Owner: ChiTaRS
RILPL2
Q969X0
NM_145058.2		1..613
100.0%		-
12
NM_031370.2		613..761
98.7%		-
4		1
0
0		exon-exon
3
Homo Sapiens		SplGraphs

ANNOTATION OF CHIMERA FUSION

GenBank ID: AA010774 FASTA
Head Gene (1) Alignment: LAMB2 | OMIM: 150325 Tail Gene (2) Alignment: HNRNPD | OMIM: 601324 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
39133-4912505549125322141protein-coding31844-823541388235419091oncogene,
protein-coding		 232 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
Laminin_N (PF00055, IPR008211, SM00136) 234 47 281 4.8e-80 254.600 Laminin N-terminal (Domain VI)
Laminin_EGF (PF00053, IPR002049, SM00180) 49 283 344 1.5e-10 27.400 Laminin EGF domain
Updated: 2019-02-20
Owner: ChiTaRS
XM_005265127.4		1..183
99.5%		-
3
NM_031370.2		180..232
98.2%		-
4		1
0
0		exon-exon
4
Homo Sapiens		 ChimerDB

ANNOTATION OF CHIMERA FUSION

GenBank ID: BU632297 FASTA
Head Gene (1) Alignment: SNU13 | OMIM: 601304 Tail Gene (2) Alignment: HNRNPD | OMIM: 601324 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
480922+416748094167496111protein-coding31844+823568838235964061oncogene,
protein-coding		 672 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
RRM_1 (PF00076, IPR000504, SM00361) 70 344 413 4.5e-21 60.800 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
NID (PF07292, IPR009909) 90 471 518 3.7e-06 13.900 Nmi/IFP 35 domain (NID)
Updated: 2019-02-21
Owner: ChiTaRS
NM_005008.3		19..171
100.0%		+
22
NM_031370.2		170..646
99.6%		+
4		1
0
0		exon-exon
5
Homo Sapiens		 ChimerDB

ANNOTATION OF CHIMERA FUSION

GenBank ID: BM835099 FASTA
Head Gene (1) Alignment: HNRNPD | OMIM: 601324 Tail Gene (2) Alignment: NOL6 | OMIM: 611532 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
31844-823736958237398091oncogene,
protein-coding		650839-3346582933466173191protein-coding 447 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
Nrap (PF03813, IPR005554) 1003 90 476 2.4e-111 359.100 Nrap protein
Updated: 2019-02-21
Owner: ChiTaRS
NM_031370.2		1..282
100.0%		-
4
NM_022917.4		276..447
100.0%		-
9		1
0
0		exon-exon
6
Homo Sapiens		 ChimerDB

ANNOTATION OF CHIMERA FUSION

GenBank ID: BE646088 FASTA
Head Gene (1) Alignment: HNRNPD | OMIM: 601324 Tail Gene (2) Alignment: VAMP2 | OMIM: 185881 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
31844+823539868235410511oncogene,
protein-coding		684417+8160134816033951protein-coding 339 hg38
Updated: 2019-02-20
Owner: ChiTaRS
NM_031370.2		17..136
97.5%		+
4
NM_014232.2		134..339
100.0%		+
17		1
0
0		exon-exon
7
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: BF805263 FASTA
Head Gene (1) Alignment: PPDPF Tail Gene (2) Alignment: HNRNPD | OMIM: 601324 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
7914420-635215316352173941protein-coding31844+823568508235870861oncogene,
protein-coding		 369 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
TMEM192 (PF14802, IPR029399) 235 5 47 0.015 0.500 TMEM192 family
RRM_1 (PF00076, IPR000504, SM00361) 70 166 230 5.5e-16 44.500 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
NID (PF07292, IPR009909) 90 201 253 1.5e-06 15.100 Nmi/IFP 35 domain (NID)
Updated: 2019-02-20
Owner: ChiTaRS
NM_001353423.1		12..142
97.8%		-
20
NM_031370.2		133..360
100.0%		+
4		2
11
0		exon-exon
8
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: BF805251 FASTA
Head Gene (1) Alignment: PPDPF Tail Gene (2) Alignment: HNRNPD | OMIM: 601324 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
7914420-635215316352175041protein-coding31844+823568508235870861oncogene,
protein-coding		 369 hg38

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
TMEM192 (PF14802, IPR029399) 235 5 47 0.015 0.500 TMEM192 family
RRM_1 (PF00076, IPR000504, SM00361) 70 166 230 5.6e-16 44.500 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
NID (PF07292, IPR009909) 90 201 253 1.5e-06 15.100 Nmi/IFP 35 domain (NID)
Updated: 2019-02-20
Owner: ChiTaRS
NM_001353423.1		1..142
100.0%		-
20
NM_031370.2		133..360
100.0%		+
4		2
11
0		exon-exon
9
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: AW022170 FASTA
Head Gene (1) Alignment: HNRNPD | OMIM: 601324 Tail Gene (2) Alignment: PARP11 | OMIM: 616706 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
31844-823538298235414111oncogene,
protein-coding		5709712+3799919380043190protein-coding 336 hg38
Updated: 2019-02-07
Owner: ChiTaRS
NM_031370.2		8..320
100.0%		-
4
ENST00000453942		304..336
100.0%		+
12		2
3
0		exon-intron
10
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: BI492297 FASTA
Head Gene (1) Alignment: PARP11 | OMIM: 616706 Tail Gene (2) Alignment: HNRNPD | OMIM: 601324 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
5709712-3799919380042820protein-coding31844+823538298235423091oncogene,
protein-coding		 422 hg38
Updated: 2019-02-17
Owner: ChiTaRS
ENST00000416739		1..30
100.0%		-
12
NM_031370.2		14..415
100.0%		+
4		2
3
0		intron-exon

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