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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'HMGB1'

Total of fusion sequences: 30 (from 1493742 parsed EST/mRNAs. Last update 2019-12-11 12:04:16)

Organism Fusion:
Graphical View,
Annotation,
PPI network
Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y)
Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences
Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript
Start1..End1
Ident1%
Strand1
Chrom1
Name(s)2,
transcript
Start2..End2
Ident2%
Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Homo Sapiens
SplGraphs SYT11
Q9BT88

XM_005245014.3
1..4280
98.9%
+
1

NM_001313893.1
4275..5974
96.7%
-
13
1
0
0
exon-intron
2
Homo Sapiens
SplGraphs
NM_001286264.1
1..321
100.0%
+
6

XM_024449344.1
321..551
99.6%
-
13
1
0
0
exon-exon
3
Homo Sapiens

XM_024449344.1
8..350
100.0%
-
13

XM_006720692.3
22..357
98.6%
-
15
2
599
109
exon-intron
4
Homo Sapiens

XM_024449344.1
1..821
98.9%
-
13

XM_006720692.3
726..828
97.8%
-
15
2
599
109
exon-intron
5
Homo Sapiens
HMGB1P5 1..520
95.5%
-
3

XM_024449344.1
3..544
98.7%
+
13
0
546
1653
exon-exon
6
Homo Sapiens

XM_024449344.1
2..559
99.0%
-
13
HMGB1P5 9..644
98.1%
+
3
4
221
659
exon-exon
7
Homo Sapiens

NM_001036.4
14..37
100.0%
-
15

XM_024449344.1
22..594
95.2%
+
13
2
147
0
intron-exon
8
Homo Sapiens

NM_001036.4
1..24
100.0%
-
15

XM_024449344.1
9..451
95.1%
+
13
2
147
0
intron-exon
9
Homo Sapiens

XM_024449344.1
1..265
99.7%
-
13
HMGB1P5 21..297
98.2%
+
3
4
136
324
exon-exon
10
Homo Sapiens

XM_024449344.1
10..444
99.8%
-
13
HMGB1P5 53..464
99.6%
+
3
4
16
0
exon-exon

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