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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'HDAC4'

Total of fusion sequences: 16 (from 1873828 parsed EST/mRNAs. Last update 2020-01-23 14:57:17)

Organism Fusion:
Graphical View,
Annotation,
PPI network
Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y)
Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences
Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript
Start1..End1
Ident1%
Strand1
Chrom1
Name(s)2,
transcript
Start2..End2
Ident2%
Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
11
Homo Sapiens

XM_005264381.4
6..104
100.0%
-
2

XM_011512221.1
86..105
100.0%
+
2
1
0
0
exon-intron
12
Homo Sapiens
59..80
100.0%
-
2
70..94
100.0%
+
11
1
0
0
intron-intron
13
Homo Sapiens

NM_001728.3
1..725
99.6%
+
19

XM_011512221.1
725..745
100.0%
+
2
1
0
0
exon-intron
14
Homo Sapiens
EFCAB9
A8MZ26
51..71
100.0%
-
5
63..87
100.0%
-
2
1
0
0
intron-intron
15
Homo Sapiens

XM_011512221.1
4..113
98.2%
+
2

XM_017014096.2
108..389
99.0%
+
8
1
0
0
intron-intron
16
Homo Sapiens

NM_001085.4
1..334
100.0%
+
14

XM_011512223.2
322..342
100.0%
-
2
1
0
0
exon-intron

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