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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'Gpc5'

Total of fusion sequences: 28 (from 1493742 parsed EST/mRNAs. Last update 2019-12-11 12:04:16)

Organism Fusion:
Graphical View,
Annotation,
PPI network 		Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y) 		Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences		 Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript		 Start1..End1
Ident1% 		Strand1
Chrom1 		Name(s)2,
transcript		 Start2..End2
Ident2% 		Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: BC011276 FASTA
UniProtKB: O54879 High mobility group protein B3 (High mobility group protein 2a) (HMG-2a) (High mobility group protein 4) (HMG-4)
Fusion Gene(s): Hmgb3 Hmg2a Hmg4
Head Gene (1) Alignment: Hmgb3 Tail Gene (2) Alignment: Gpc5 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
15354X+71555954715606515110397814-11555476811555595800 1521 mm10
Updated: 2019-06-11
Owner: ChiTaRS
NM_001293625.1		1..1510
100.0%		+
X
XM_011244876.2		634..1519
95.6%		-
14		2
3
0		exon-intron
2
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: BC083352 FASTA
UniProtKB: O54879 High mobility group protein B3 (High mobility group protein 2a) (HMG-2a) (High mobility group protein 4) (HMG-4)
Fusion Gene(s): Hmgb3 Hmg2a Hmg4
Head Gene (1) Alignment: Hmgb3 Tail Gene (2) Alignment: Gpc5 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
15354X+71558050715606544110397814-11555476811555595800 1490 mm10
Updated: 2019-06-15
Owner: ChiTaRS
XM_006527842.3		4..1464
100.0%		+
X
XM_011244876.2		585..1473
95.5%		-
14		2
3
0		exon-intron
3
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: BC060977 FASTA
UniProtKB: Q6P905 CD48 antigen
Fusion Gene(s): Cd48
Head Gene (1) Alignment: Cd48 Tail Gene (2) Alignment: Gpc5 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
125061+1716820271717052544110397814-11544934511544936800 1200 mm10
Updated: 2019-06-15
Owner: ChiTaRS
NM_007649.4		1..1167
100.0%		+
1
XM_011244876.2		1167..1190
100.0%		-
14		1
0
0		exon-intron
4
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: BC033343 FASTA
UniProtKB: Q8R1B5 Complexin-3 (Complexin III) (CPX III)
Fusion Gene(s): Cplx3
Head Gene (1) Alignment: Cplx3 Tail Gene (2) Alignment: Gpc5 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
2354159-57599991576062323110397814-11599488411599494200 2876 mm10
Updated: 2019-06-15
Owner: ChiTaRS
NM_146223.3		1..2811
100.0%		-
9
XM_011244876.2		2809..2867
95.0%		-
14		1
0
0		exon-intron
5
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: BC058162 FASTA
UniProtKB: Q60855 Receptor-interacting serine/threonine-protein kinase 1 (EC 2.7.11.1) (Cell death protein RIP) (Receptor-interacting protein 1) (RIP-1)
Fusion Gene(s): Ripk1 Rinp Rip
Head Gene (1) Alignment: Ripk1 Tail Gene (2) Alignment: Gpc5 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1976613+3400244134033678111protein-coding10397814-11599488411599494900 3225 mm10
Updated: 2019-06-11
Owner: ChiTaRS
XM_006516607.3		1..3189
100.0%		+
13
XM_011244876.2		3184..3225
97.6%		-
14		1
0
0		exon-intron
6
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: BC052349 FASTA
UniProtKB: P82349 Beta-sarcoglycan (Beta-SG) (43 kDa dystrophin-associated glycoprotein) (43DAG)
Fusion Gene(s): Sgcb
Head Gene (1) Alignment: Sgcb Tail Gene (2) Alignment: Gpc5 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
240515-73635236736477216110397814-11577784611577792500 1294 mm10
Updated: 2019-06-11
Owner: ChiTaRS
NM_011890.4		1..1230
100.0%		-
5
XM_011244876.2		1226..1287
96.1%		-
14		1
0
0		exon-intron
7
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: AW989904 FASTA
Head Gene (1) Alignment: Gpc5 Tail Gene (2) Alignment: Cldn3 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
10397814-11626959311626973800127395-13498687813498747311 643 mm10
Updated: 2019-06-15
Owner: ChiTaRS
XM_011244876.2		5..93
97.3%		-
14
NM_009902.4		26..621
98.0%		-
5		1
0
0		intron-exon
8
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: DV063347 FASTA
Head Gene (1) Alignment: Pdlim3 Tail Gene (2) Alignment: Gpc5 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
533188+45918999459194081110397814-11599491611599494500 936 mm10
Updated: 2019-06-16
Owner: ChiTaRS
XM_006509465.2		44..453
99.8%		+
8
XM_011244876.2		454..483
96.7%		-
14		1
0
0		exon-intron
9
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: CO805929 FASTA
Head Gene (1) Alignment: Ppp1r11 Tail Gene (2) Alignment: Gpc5 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
7649717-369492903695167631protein-coding10397814-11592509911592537000 656 mm10
Updated: 2019-06-11
Owner: ChiTaRS
NM_029632.3		2..629
100.0%		-
17
XM_011244876.2		375..645
97.3%		-
14		1
0
0		exon-intron
10
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: DV043940 FASTA
Head Gene (1) Alignment: Prdx1 Tail Gene (2) Alignment: Gpc5 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
184774+1166856021166995156110397814+11510584911510588800 938 mm10
Updated: 2019-06-16
Owner: ChiTaRS
NM_011034.4		1..926
99.6%		+
4
XM_011244876.2		914..938
100.0%		+
14		1
0
0		exon-intron

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