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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'Glt1d1'

Total of fusion sequences: 9 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism Fusion:
Graphical View,
Annotation,
PPI network 		Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y) 		Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences		 Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript		 Start1..End1
Ident1% 		Strand1
Chrom1 		Name(s)2,
transcript		 Start2..End2
Ident2% 		Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: BC048148 FASTA
UniProtKB: P13864 DNA (cytosine-5)-methyltransferase 1 (Dnmt1) (Met-1) (EC 2.1.1.37) (DNA methyltransferase MmuI) (DNA MTase MmuI) (M.MmuI) (MCMT)
Fusion Gene(s): Dnmt1 Dnmt Met1 Uim
Head Gene (1) Alignment: Dnmt1 Tail Gene (2) Alignment: Glt1d1 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
134339-2090720920952846391protein-coding3198045-12767557312770111160 5261 mm10
Updated: 2019-06-15
Owner: ChiTaRS
NM_001314011.1		1..5234
100.0%		-
9		 Glt1d1
A4FUP9
XM_006504309.3		5100..5261
98.2%		-
5		1
0
0		exon-intron
2
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: DV048575 FASTA
Head Gene (1) Alignment: Rab6a Tail Gene (2) Alignment: Glt1d1 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
193467+10062089710062126300protein-coding3198045-12764746712764769300 933 mm10
Updated: 2019-06-16
Owner: ChiTaRS
NM_024287.4		21..386
99.5%		+
7		 Glt1d1
A4FUP9
NM_177005.4		322..406
97.7%		-
5		1
0
0		intron-intron
3
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: DV050579 FASTA
Head Gene (1) Alignment: Mrps25 Tail Gene (2) Alignment: Glt1d1 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
646586-9217411792174833113198045-12764746712764750300 916 mm10
Updated: 2019-06-16
Owner: ChiTaRS
NM_025578.4		22..738
99.8%		-
6		 Glt1d1
A4FUP9
NM_177005.4		734..770
97.3%		-
5		1
0
0		exon-intron
4
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: AW215500 FASTA
Head Gene (1) Alignment: Glt1d1 Tail Gene (2) Alignment: Ttc9c Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
3198045-127660721127660745007038719+8811295881178411 504 mm10
Updated: 2019-06-16
Owner: ChiTaRS
Glt1d1
A4FUP9
NM_177005.4		1..25
100.0%		-
5
NM_027412.3		14..504
99.0%		+
19		1
0
0		intron-exon
5
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: CO799727 FASTA
Head Gene (1) Alignment: Kif23 Tail Gene (2) Alignment: Glt1d1 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
718199-6191727761917679113198045-12765746412765749300 495 mm10
Updated: 2019-06-11
Owner: ChiTaRS
XM_006511453.3		26..432
98.6%		-
9		 Glt1d1
A4FUP9
NM_177005.4		431..460
100.0%		-
5		1
0
0		exon-intron
6
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: CO799203 FASTA
Head Gene (1) Alignment: Polr2i Tail Gene (2) Alignment: Glt1d1 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
699207+3023233730233387613198045-12765727712765749400 741 mm10
Updated: 2019-06-11
Owner: ChiTaRS
NM_027259.1		19..445
99.6%		+
7		 Glt1d1
A4FUP9
NM_177005.4		445..488
97.7%		-
5		1
0
0		exon-intron
7
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: DV071822 FASTA
Head Gene (1) Alignment: Lig1 Tail Gene (2) Alignment: Glt1d1 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
168817+1328525713288734313198045-12764746612764750900 987 mm10
Updated: 2019-06-16
Owner: ChiTaRS
NM_001199310.1		48..381
100.0%		+
7		 Glt1d1
A4FUP9
NM_177005.4		370..412
97.5%		-
5		1
0
0		exon-intron
8
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: DV049609 FASTA
Head Gene (1) Alignment: Exoc6 Tail Gene (2) Alignment: Glt1d1 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
10737119+376337833763415400protein-coding3198045-12764746712764749800 982 mm10
Updated: 2019-06-16
Owner: ChiTaRS
XM_017318044.1		23..395
99.0%		+
19		 Glt1d1
A4FUP9
NM_177005.4		378..409
100.0%		-
5		1
0
0		intron-intron
9
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: AI585463 FASTA
Head Gene (1) Alignment: Rps13 Tail Gene (2) Alignment: Glt1d1 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
680527-116324873116332990313198045-12769069412769081800 481 mm10
Updated: 2019-06-16
Owner: ChiTaRS
NM_026533.3		1..409
99.0%		-
7		 Glt1d1
A4FUP9
NM_177005.4		357..481
100.0%		-
5		1
0
0		exon-intron

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