Result for the search of Gene Name/NCBI ID(s): 'GAB1'

Total of fusion sequences: 17 (from 1493742 parsed EST/mRNAs. Last update 2019-12-11 12:04:16)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Mus musculus	CN675305 ANNOTATION OF CHIMERA FUSION GenBank ID: CN675305 FASTA Head Gene (1) Alignment: Gab1 Tail Gene (2) Alignment: Gab1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 14388 8 - 80785144 80785188 1 1 protein-coding 14388 8 - 80788490 80788730 1 1 protein-coding 590 mm10 Updated: 2019-05-28 Owner: ChiTaRS	Gab1 A0A1B0GS41 Q505A4 Q9QYY0 NM_001301298.1	2..46 97.8%	- 8	Gab1 A0A1B0GS41 Q505A4 Q9QYY0 NM_001301298.1	33..273 99.6%	- 8	1 0 0	exon-exon	3HiC Hi-C contacts of chimeric junction Fusion Gene1 chromo- some1 junction start1 junction end1 Hi-C point1 Δ1 Gene2 chromo- some2 junction start2 junction end2 Hi-C point2 Δ2 Cell lines (Cell_ID,) PubMed(,s) 2 3 19 - - 32 - 8 25 - - 33 - 34 - CN675305 Gab1 8 80785175 80785188 80780000 5175 Gab1 8 80788490 80788503 80780000 8490 Patski (CVCL_Y494), ES-C57BL/6 (CVCL_5746) 27432957, 28802249 CN675305 Gab1 8 80785175 80785188 80780000 5175 Gab1 8 80788490 80788503 80790000 1497 Patski (CVCL_Y494), ES-C57BL/6 (CVCL_5746) 27432957, 28802249 CN675305 Gab1 8 80785175 80785188 80790000 4812 Gab1 8 80788490 80788503 80790000 1497 Patski (CVCL_Y494), ES-C57BL/6 (CVCL_5746) 27432957, 28802249
2 Homo Sapiens	AW023245 ANNOTATION OF CHIMERA FUSION GenBank ID: AW023245 FASTA Head Gene (1) Alignment: RPS2 | OMIM: 603624 Tail Gene (2) Alignment: GAB1 | OMIM: 604439 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 6187 16 - 1962058 1962534 2 1 protein-coding 2549 4 - 143349209 143349237 13 0 oncogene 277 hg38 Updated: 2019-02-01 Owner: ChiTaRS	RPS2 D3DU83 E9PM36 E9PMM9 E9PPT0 E9PQD7 H0YE27 H0YEN5 H3BNG3 I3L404 P15880 Q3KQT6 Q6IPX5 Q8J014 Q8N5L9 Q8NI61 Q9BSW5 NM_002952.3	8..258 100.0%	- 16	GAB1 B7Z3B9 D6RF42 D6RIF8 D6RIS0 H0Y8F4 H0YA71 Q13480 XM_017007966.1	258..277 96.3%	- 4	0 2280 8	exon-intron
3 Homo Sapiens	BI858621 ANNOTATION OF CHIMERA FUSION GenBank ID: BI858621 FASTA Head Gene (1) Alignment: RPS2 | OMIM: 603624 Tail Gene (2) Alignment: GAB1 | OMIM: 604439 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 6187 16 - 1962062 1964814 7 1 protein-coding 2549 4 - 143349217 143349265 0 0 oncogene 869 hg38 Updated: 2019-06-06 Owner: ChiTaRS	RPS2 D3DU83 E9PM36 E9PMM9 E9PPT0 E9PQD7 H0YE27 H0YEN5 H3BNG3 I3L404 P15880 Q3KQT6 Q6IPX5 Q8J014 Q8N5L9 Q8NI61 Q9BSW5 NM_002952.3	1..855 98.0%	- 16	GAB1 B7Z3B9 D6RF42 D6RIF8 D6RIS0 H0Y8F4 H0YA71 Q13480 XM_017007966.1	829..865 95.3%	- 4	0 2280 8	exon-intron
4 Homo Sapiens	CF123301 ANNOTATION OF CHIMERA FUSION GenBank ID: CF123301 FASTA Head Gene (1) Alignment: RPS2P20 Tail Gene (2) Alignment: GAB1 | OMIM: 604439 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 645018 4 - 143349229 143349283 1 1 pseudo 2549 4 - 143349209 143349261 0 0 oncogene 101 hg38 Updated: 2019-04-13 Owner: ChiTaRS	RPS2P20	19..74 97.0%	- 4	GAB1 B7Z3B9 D6RF42 D6RIF8 D6RIS0 H0Y8F4 H0YA71 Q13480 XM_017007966.1	42..85 97.0%	- 4	2 256 0	exon-intron
5 Homo Sapiens	CD240160 ANNOTATION OF CHIMERA FUSION GenBank ID: CD240160 FASTA Head Gene (1) Alignment: RPS2P20 Tail Gene (2) Alignment: GAB1 | OMIM: 604439 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 645018 4 - 143349229 143349525 1 1 pseudo 2549 4 - 143349199 143349517 0 0 oncogene 933 hg38 Updated: 2019-03-31 Owner: ChiTaRS	RPS2P20	42..337 95.6%	- 4	GAB1 B7Z3B9 D6RF42 D6RIF8 D6RIS0 H0Y8F4 H0YA71 Q13480 XM_017007966.1	49..367 95.6%	- 4	2 256 0	exon-intron
6 Homo Sapiens	AW794748 ANNOTATION OF CHIMERA FUSION GenBank ID: AW794748 FASTA Head Gene (1) Alignment: GAB1 | OMIM: 604439 Tail Gene (2) Alignment: OXLD1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 2549 4 - 143384894 143385128 1 0 oncogene 339229 17 + 81666013 81666288 1 1 protein-coding 504 hg38 Updated: 2019-02-02 Owner: ChiTaRS	GAB1 B7Z3B9 D6RF42 D6RIF8 D6RIS0 H0Y8F4 H0YA71 Q13480 XM_006714167.4	12..243 98.8%	- 4	OXLD1 I3L208 I3L247 Q5BKU9 NR_130939.1	229..504 100.0%	+ 17	1 0 0	intron-exon
7 Homo Sapiens	AW794847 ANNOTATION OF CHIMERA FUSION GenBank ID: AW794847 FASTA Head Gene (1) Alignment: GAB1 | OMIM: 604439 Tail Gene (2) Alignment: OXLD1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 2549 4 - 143384894 143385122 1 0 oncogene 339229 17 + 81666013 81666288 1 1 protein-coding 499 hg38 Updated: 2019-02-02 Owner: ChiTaRS	GAB1 B7Z3B9 D6RF42 D6RIF8 D6RIS0 H0Y8F4 H0YA71 Q13480 XM_006714167.4	13..238 99.2%	- 4	OXLD1 I3L208 I3L247 Q5BKU9 NR_130939.1	224..499 100.0%	+ 17	1 0 0	intron-exon
8 Mus musculus	DV072120 ANNOTATION OF CHIMERA FUSION GenBank ID: DV072120 FASTA Head Gene (1) Alignment: Gab1 Tail Gene (2) Alignment: Gm35111 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 14388 8 - 80815898 80816300 0 0 protein-coding 102638581 13 - 90483170 90483199 0 0 977 mm10 Updated: 2019-06-16 Owner: ChiTaRS	Gab1 A0A1B0GS41 Q505A4 Q9QYY0 NM_001301298.1	19..421 99.6%	- 8	Gm35111 XR_382721.2	415..444 100.0%	- 13	1 0 0	intron-intron
9 Homo Sapiens	AA907583 ANNOTATION OF CHIMERA FUSION GenBank ID: AA907583 FASTA Head Gene (1) Alignment: PTPRU | OMIM: 602454 Tail Gene (2) Alignment: GAB1 | OMIM: 604439 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 10076 1 - 29326398 29326780 32 1 oncogene 2549 4 - 143470667 143470742 1 1 oncogene 439 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to MAM (PF00629, IPR000998, SM00137) 160 70 230 9.1e-39 119.100 MAM domain, meprin/A5/mu fn3 (PF00041, IPR003961, SM00060) 85 330 413 3.1e-11 29.800 Fibronectin type III domain Y_phosphatase (PF00102, IPR000242, SM00194) 235 946 1176 6.8e-81 257.400 Protein-tyrosine phosphatase Updated: 2019-02-20 Owner: ChiTaRS	PTPRU L8ECC6 Q92729 XM_016999993.1	1..374 99.8%	- 1	GAB1 B7Z3B9 D6RF42 D6RIF8 D6RIS0 H0Y8F4 H0YA71 Q13480 XM_017007966.1	356..430 97.3%	- 4	1 0 0	exon-exon
10 Mus musculus	CF578450 ANNOTATION OF CHIMERA FUSION GenBank ID: CF578450 FASTA Head Gene (1) Alignment: Pecam1 Tail Gene (2) Alignment: Gab1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 18613 11 + 106634005 106748030 16 0 protein-coding 14388 8 + 80864158 80864903 0 0 protein-coding 900 mm10 Updated: 2019-06-12 Owner: ChiTaRS	Pecam1 B1ARA9 B1ARB3 Q08481 Q8CAW4 Q8K4F4 XM_011248792.1	1..247 96.2%	+ 11	Gab1 A0A1B0GS41 Q505A4 Q9QYY0 NM_001301298.1	11..761 97.2%	+ 8	1 0 0	intron-intron

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