Result for the search of Gene Name/NCBI ID(s): 'GAB1'

Total of fusion sequences: 12 (from 3,568,812 parsed EST/mRNAs. Last update 2020-07-14 10:36:55)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	AW023245 ANNOTATION OF CHIMERA FUSION GenBank ID: AW023245 FASTA Head Gene (1) Alignment: RPS2 | OMIM: 603624 Tail Gene (2) Alignment: GAB1 | OMIM: 604439 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 6187 16 - 1962058 1962534 2 1 protein-coding 2549 4 - 143349209 143349237 13 0 oncogene 277 hg38 Updated: 2019-02-01 Owner: ChiTaRS	RPS2 D3DU83 E9PM36 E9PMM9 E9PPT0 E9PQD7 H0YE27 H0YEN5 H3BNG3 I3L404 P15880 Q3KQT6 Q6IPX5 Q8J014 Q8N5L9 Q8NI61 Q9BSW5 NM_002952.3	8..258 100.0%	- 16	GAB1 B7Z3B9 D6RF42 D6RIF8 D6RIS0 H0Y8F4 H0YA71 Q13480 XM_017007966.1	258..277 96.3%	- 4	0 2280 8	exon-intron
2 Homo Sapiens	BI858621 ANNOTATION OF CHIMERA FUSION GenBank ID: BI858621 FASTA Head Gene (1) Alignment: RPS2 | OMIM: 603624 Tail Gene (2) Alignment: GAB1 | OMIM: 604439 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 6187 16 - 1962062 1964814 7 1 protein-coding 2549 4 - 143349217 143349265 0 0 oncogene 869 hg38 Updated: 2019-06-06 Owner: ChiTaRS	RPS2 D3DU83 E9PM36 E9PMM9 E9PPT0 E9PQD7 H0YE27 H0YEN5 H3BNG3 I3L404 P15880 Q3KQT6 Q6IPX5 Q8J014 Q8N5L9 Q8NI61 Q9BSW5 NM_002952.3	1..855 98.0%	- 16	GAB1 B7Z3B9 D6RF42 D6RIF8 D6RIS0 H0Y8F4 H0YA71 Q13480 XM_017007966.1	829..865 95.3%	- 4	0 2280 8	exon-intron
3 Homo Sapiens	CF123301 ANNOTATION OF CHIMERA FUSION GenBank ID: CF123301 FASTA Head Gene (1) Alignment: RPS2P20 Tail Gene (2) Alignment: GAB1 | OMIM: 604439 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 645018 4 - 143349229 143349283 1 1 pseudo 2549 4 - 143349209 143349261 0 0 oncogene 101 hg38 Updated: 2019-04-13 Owner: ChiTaRS	RPS2P20	19..74 97.0%	- 4	GAB1 B7Z3B9 D6RF42 D6RIF8 D6RIS0 H0Y8F4 H0YA71 Q13480 XM_017007966.1	42..85 97.0%	- 4	2 256 0	exon-intron
4 Homo Sapiens	CD240160 ANNOTATION OF CHIMERA FUSION GenBank ID: CD240160 FASTA Head Gene (1) Alignment: RPS2P20 Tail Gene (2) Alignment: GAB1 | OMIM: 604439 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 645018 4 - 143349229 143349525 1 1 pseudo 2549 4 - 143349199 143349517 0 0 oncogene 933 hg38 Updated: 2019-03-31 Owner: ChiTaRS	RPS2P20	42..337 95.6%	- 4	GAB1 B7Z3B9 D6RF42 D6RIF8 D6RIS0 H0Y8F4 H0YA71 Q13480 XM_017007966.1	49..367 95.6%	- 4	2 256 0	exon-intron
5 Homo Sapiens	AW794748 ANNOTATION OF CHIMERA FUSION GenBank ID: AW794748 FASTA Head Gene (1) Alignment: GAB1 | OMIM: 604439 Tail Gene (2) Alignment: OXLD1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 2549 4 - 143384894 143385128 1 0 oncogene 339229 17 + 81666013 81666288 1 1 protein-coding 504 hg38 Updated: 2019-02-02 Owner: ChiTaRS	GAB1 B7Z3B9 D6RF42 D6RIF8 D6RIS0 H0Y8F4 H0YA71 Q13480 XM_006714167.4	12..243 98.8%	- 4	OXLD1 I3L208 I3L247 Q5BKU9 NR_130939.1	229..504 100.0%	+ 17	1 0 0	intron-exon
6 Homo Sapiens	AW794847 ANNOTATION OF CHIMERA FUSION GenBank ID: AW794847 FASTA Head Gene (1) Alignment: GAB1 | OMIM: 604439 Tail Gene (2) Alignment: OXLD1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 2549 4 - 143384894 143385122 1 0 oncogene 339229 17 + 81666013 81666288 1 1 protein-coding 499 hg38 Updated: 2019-02-02 Owner: ChiTaRS	GAB1 B7Z3B9 D6RF42 D6RIF8 D6RIS0 H0Y8F4 H0YA71 Q13480 XM_006714167.4	13..238 99.2%	- 4	OXLD1 I3L208 I3L247 Q5BKU9 NR_130939.1	224..499 100.0%	+ 17	1 0 0	intron-exon
7 Homo Sapiens	AA907583 ANNOTATION OF CHIMERA FUSION GenBank ID: AA907583 FASTA Head Gene (1) Alignment: PTPRU | OMIM: 602454 Tail Gene (2) Alignment: GAB1 | OMIM: 604439 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 10076 1 - 29326398 29326780 32 1 oncogene 2549 4 - 143470667 143470742 1 1 oncogene 439 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to MAM (PF00629, IPR000998, SM00137) 160 70 230 9.1e-39 119.100 MAM domain, meprin/A5/mu fn3 (PF00041, IPR003961, SM00060) 85 330 413 3.1e-11 29.800 Fibronectin type III domain Y_phosphatase (PF00102, IPR000242, SM00194) 235 946 1176 6.8e-81 257.400 Protein-tyrosine phosphatase Updated: 2019-02-20 Owner: ChiTaRS	PTPRU L8ECC6 Q92729 XM_016999993.1	1..374 99.8%	- 1	GAB1 B7Z3B9 D6RF42 D6RIF8 D6RIS0 H0Y8F4 H0YA71 Q13480 XM_017007966.1	356..430 97.3%	- 4	1 0 0	exon-exon
8 Homo Sapiens	EC488762 ANNOTATION OF CHIMERA FUSION GenBank ID: EC488762 FASTA Head Gene (1) Alignment: GAB1 | OMIM: 604439 Tail Gene (2) Alignment: RPS2P5 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 2549 4 - 143349708 143350193 0 0 oncogene 100130562 12 + 118246468 118246563 1 1 pseudo 104 hg38 Updated: 2019-04-10 Owner: ChiTaRS	GAB1 B7Z3B9 D6RF42 D6RIF8 D6RIS0 H0Y8F4 H0YA71 Q13480 XM_017007966.1	1..79 97.5%	- 4	RPS2P5	15..104 97.8%	+ 12	1 0 0	intron-exon
9 Homo Sapiens	BM015325 ANNOTATION OF CHIMERA FUSION GenBank ID: BM015325 FASTA Head Gene (1) Alignment: LOC105371574 Tail Gene (2) Alignment: GAB1 | OMIM: 604439 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 105371574 17 - 19445917 19446606 0 0 ncRNA 2549 4 - 143349214 143349557 0 0 oncogene 713 hg38 Updated: 2019-06-06 Owner: ChiTaRS	LOC105371574 XR_934306.3	25..712 98.9%	- 17	GAB1 B7Z3B9 D6RF42 D6RIF8 D6RIS0 H0Y8F4 H0YA71 Q13480 XM_017007966.1	377..713 96.9%	- 4	1 0 0	intron-intron
10 Homo Sapiens	DA240048 ANNOTATION OF CHIMERA FUSION GenBank ID: DA240048 FASTA Head Gene (1) Alignment: MAPRE2 | OMIM: 605789 Tail Gene (2) Alignment: GAB1 | OMIM: 604439 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 10982 18 + 35005489 35005553 2 1 protein-coding 2549 4 + 143433489 143469407 10 1 oncogene 550 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Ste5 (PF11610, IPR021651) 30 744 764 2.3e-05 10.600 Scaffold protein Ste5, Fus3-binding region Updated: 2019-02-21 Owner: ChiTaRS	MAPRE2 A0A024RC33 K7EL66 K7ENB3 K7ERD8 M0QX52 Q15555 NM_001143826.2	16..80 100.0%	+ 18	GAB1 B7Z3B9 D6RF42 D6RIF8 D6RIS0 H0Y8F4 H0YA71 Q13480 XM_017007966.1	79..550 100.0%	+ 4	1 0 0	exon-exon

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