Search Database Collection

 

Choose parameters to search by

Updates:

Search filters
Rank: Junction Consistence: Sense-ANTIsense

Read-through Chimeras Mass-spec Hits Breakpoints RNAseq evidence
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search: Gene Name/NCBI ID(s): 'FHL1'

Total of fusion sequences: 6 (from 1,350,599 parsed EST/mRNAs. Last update 2019-06-16)

Organism Fusion:
Graphical View,
Annotation, PPI 		Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y) 		RNAseq,
Mass-spec
evidences		 Cancer
Breakpoint,
PubMed, iHOP
reference
Name(s)1 Start1..End1
Ident1% 		Strand1
Chrom1 		Name(s)2 Start2..End2
Ident2% 		Strand2
Chrom2
1234,5,67,1789,10,1112,2513,14,151617
Homo SapiensSplGraphs

ANNOTATION OF CHIMERA FUSION

GenBank ID: DA822142 FASTA
Head Gene (1) Alignment: PHB2 | OMIM: 610704 Tail Gene (2) Alignment: FHL1 | OMIM: 300163 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1133112-70797397079891NANAprotein-coding2273X+135290092135292225NANAtumor suppressor NA hg19

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
LIM (PF00412, IPR001781, SM00132) 58 55 109 3.1e-16 45.700 LIM domain
DUF4428 (PF14471, IPR027872) 51 150 192 0.00035 6.800 Domain of unknown function (DUF4428)
Updated: 2012-12-12
Owner: ChiTaRS
3..156
98.1%		-
12		 156..567
100.0%		+
X		1
0
0
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: BF092514 FASTA
Head Gene (1) Alignment: BTG3 | OMIM: 605674 Tail Gene (2) Alignment: FHL1 | OMIM: 300163 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1095021+1896636618966569NANAtumor suppressor2273X-135292509135292681NANAtumor suppressor NA hg19

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
BTG (PF07742, IPR002087, SM00099) 116 1 111 1.6e-43 133.500 BTG family
Updated: 2012-12-12
Owner: ChiTaRS
1..201
99.1%		+
21		 194..366
100.0%		-
X		1
0
0
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: AJ710343 FASTA
Head Gene (1) Alignment: FHL1 | OMIM: 300163 Tail Gene (2) Alignment: SGCA | OMIM: 600119 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
2273X-135293107135293511NANAtumor suppressor644217+4825264148252722NANAprotein-coding NA hg19

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
LIM (PF00412, IPR001781, SM00132) 58 239 272 0.00023 7.700 LIM domain
zf-MYND (PF01753, IPR002893) 38 422 466 0.0023 4.300 MYND finger
Updated: 2012-12-12
Owner: ChiTaRS
1..406
99.3%		-
X		 405..486
98.8%		+
17		1
0
0
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: CA411570 FASTA
Head Gene (1) Alignment: CTSL | OMIM: 116880 Tail Gene (2) Alignment: FHL1 | OMIM: 300163 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
15149-9034625790346308NANAoncogene2273X-135291335135291410NANAtumor suppressor NA hg19

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
Inhibitor_I29 (PF08246, IPR013201, SM00848) 58 325 384 3.6e-15 42.500 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 (PF00112, IPR000668, SM00645) 219 410 628 9.1e-89 283.400 Papain family cysteine protease
Updated: 2012-12-12
Owner: ChiTaRS
18..69
100.0%		-
9		 63..138
97.4%		-
X		1
0
0
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: BF825718 FASTA
Head Gene (1) Alignment: FHL1 | OMIM: 300163 Tail Gene (2) Alignment: COX6C | OMIM: 124090 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
2273X-135292939135293137NANAtumor suppressor13458-100899724100905914NANAoncogene NA hg19

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
LIM (PF00412, IPR001781, SM00132) 58 239 272 0.0002 7.900 LIM domain
zf-MYND (PF01753, IPR002893) 38 422 466 0.0024 4.300 MYND finger
COX6C (PF02937, IPR004204) 70 927 996 1.7e-38 117.000 Cytochrome c oxidase subunit VIc
Updated: 2012-12-12
Owner: ChiTaRS
1..198
97.5%		-
X		 182..497
99.1%		-
8		1
0
0
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: BF827394 FASTA
Head Gene (1) Alignment: FHL1 | OMIM: 300163 Tail Gene (2) Alignment: COX6C | OMIM: 124090 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
2273X-135292939135293141NANAtumor suppressor13458-100899721100905914NANAoncogene NA hg19

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
LIM (PF00412, IPR001781, SM00132) 58 239 272 0.0002 7.900 LIM domain
zf-MYND (PF01753, IPR002893) 38 422 466 0.0024 4.300 MYND finger
Updated: 2012-12-12
Owner: ChiTaRS
6..208
97.6%		-
X		 192..510
98.8%		-
8		1
0
0