Result for the search of Gene Name/NCBI ID(s): 'FANCA'

Total of fusion sequences: 11 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	SplGraphs BF089164 ANNOTATION OF CHIMERA FUSION GenBank ID: BF089164 FASTA Head Gene (1) Alignment: PAK1 | OMIM: 602590 Tail Gene (2) Alignment: FANCA | OMIM: 607139 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 5058 11 - 77375433 77375742 12 0 oncogene, protein-coding 2175 16 - 89767186 89769886 28 1 oncogene, protein-coding 428 hg38 Updated: 2019-02-20 Owner: ChiTaRS	PAK1 A0A024R5P0 B3KNX7 E9PJF8 E9PKH9 E9PM17 E9PMP2 E9PQW5 E9PRP6 H0YCG5 H0YCM0 H0YF55 Q13153 XM_011545084.3	15..323 98.8%	- 11	FANCA A0PJU8 F5H8D5 H3BM41 H3BNS0 H3BQU1 H3BQU6 H3BQW7 H3BQX1 H3BRX3 H3BS03 H3BS84 H3BSA3 H3BSI9 H3BSL6 H3BT32 H3BT40 H3BT53 H3BUI1 H3BV66 L8E9D3 O15360 Q0VAP3 Q0VAP4 Q86U55 Q9Y4Z8 Q9Y4Z9 Q9Y500 XM_011522946.3	319..420 100.0%	- 16	1 0 0	intron-exon
2 Homo Sapiens	AA522552 ANNOTATION OF CHIMERA FUSION GenBank ID: AA522552 FASTA Head Gene (1) Alignment: FANCA | OMIM: 607139 Tail Gene (2) Alignment: C6orf62 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 2175 16 - 89784201 89784428 0 0 oncogene, protein-coding 81688 6 + 24704861 24705223 1 1 protein-coding 504 hg38 Updated: 2019-04-14 Owner: ChiTaRS	FANCA A0PJU8 F5H8D5 H3BM41 H3BNS0 H3BQU1 H3BQU6 H3BQW7 H3BQX1 H3BRX3 H3BS03 H3BS84 H3BSA3 H3BSI9 H3BSL6 H3BT32 H3BT40 H3BT53 H3BUI1 H3BV66 L8E9D3 O15360 Q0VAP3 Q0VAP4 Q86U55 Q9Y4Z8 Q9Y4Z9 Q9Y500 NM_001286167.2	1..91 97.6%	- 16	C6orf62 A0A024R026 Q9GZU0 NM_030939.4	15..383 95.0%	+ 6	1 0 0	intron-exon
3 Homo Sapiens	BF918420 ANNOTATION OF CHIMERA FUSION GenBank ID: BF918420 FASTA Head Gene (1) Alignment: FANCA | OMIM: 607139 Tail Gene (2) Alignment: DHCR24 | OMIM: 606418 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 2175 16 - 89740207 89740279 5 0 oncogene, protein-coding 1718 1 + 54850719 54851031 9 1 protein-coding 394 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to zf-AD (PF07776, IPR012934, SM00868) 76 107 189 2e-14 40.000 Zinc-finger associated domain (zf-AD) RBR (PF17208) 57 414 454 0.00021 8.400 RNA binding Region IBR (PF01485, IPR002867, SM00647) 62 448 491 0.00053 6.500 IBR domain, a half RING-finger domain zf-C2H2_4 (PF13894) 24 463 488 1.7e-06 15.100 C2H2-type zinc finger zf-H2C2_2 (PF13465, IPR007087) 26 510 536 1.2e-06 15.200 Zinc-finger double domain zf-C2H2 (PF00096, IPR007087, SM00355) 23 525 547 2.8e-08 20.300 Zinc finger, C2H2 type Updated: 2019-02-20 Owner: ChiTaRS	FANCA A0PJU8 F5H8D5 H3BM41 H3BNS0 H3BQU1 H3BQU6 H3BQW7 H3BQX1 H3BRX3 H3BS03 H3BS84 H3BSA3 H3BSI9 H3BSL6 H3BT32 H3BT40 H3BT53 H3BUI1 H3BV66 L8E9D3 O15360 Q0VAP3 Q0VAP4 Q86U55 Q9Y4Z8 Q9Y4Z9 Q9Y500 NM_000135.3	14..86 98.7%	- 16	DHCR24 A0A0A0MTI1 A0A3B3IRV7 A0A3B3ISR5 A0A3B3IT58 A0A3B3ITT9 H7C4B7 Q15392 Q3LIE7 NM_014762.3	82..394 99.7%	+ 1	1 0 0	intron-exon
4 Homo Sapiens	AA513395 ANNOTATION OF CHIMERA FUSION GenBank ID: AA513395 FASTA Head Gene (1) Alignment: FANCA | OMIM: 607139 Tail Gene (2) Alignment: ZNF282 | OMIM: 603397 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 2175 16 - 89739781 89739842 4 0 oncogene, protein-coding 8427 7 - 149225424 149225604 1 1 protein-coding 235 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to zf-AD (PF07776, IPR012934, SM00868) 76 107 189 1.5e-14 40.300 Zinc-finger associated domain (zf-AD) RBR (PF17208) 57 414 454 0.00016 8.700 RNA binding Region zf-C2H2_4 (PF13894) 24 463 488 1.3e-06 15.400 C2H2-type zinc finger zf-H2C2_2 (PF13465, IPR007087) 26 510 536 9.5e-07 15.600 Zinc-finger double domain zf-C2H2 (PF00096, IPR007087, SM00355) 23 525 547 2.2e-08 20.700 Zinc finger, C2H2 type Updated: 2019-02-20 Owner: ChiTaRS	FANCA A0PJU8 F5H8D5 H3BM41 H3BNS0 H3BQU1 H3BQU6 H3BQW7 H3BQX1 H3BRX3 H3BS03 H3BS84 H3BSA3 H3BSI9 H3BSL6 H3BT32 H3BT40 H3BT53 H3BUI1 H3BV66 L8E9D3 O15360 Q0VAP3 Q0VAP4 Q86U55 Q9Y4Z8 Q9Y4Z9 Q9Y500 NM_000135.3	1..62 100.0%	- 16	ZNF282 A0A090N8Y3 Q05BY5 Q7Z2V4 Q9UDV7 NM_001303481.1	56..235 99.5%	- 7	1 0 0	intron-exon
5 Homo Sapiens	AA483022 ANNOTATION OF CHIMERA FUSION GenBank ID: AA483022 FASTA Head Gene (1) Alignment: FANCA | OMIM: 607139 Tail Gene (2) Alignment: CENPBD1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 2175 16 + 89776152 89776173 0 0 oncogene, protein-coding 92806 16 + 89970663 89970902 1 1 protein-coding 262 hg38 Updated: 2019-11-15 Owner: ChiTaRS	FANCA A0PJU8 F5H8D5 H3BM41 H3BNS0 H3BQU1 H3BQU6 H3BQW7 H3BQX1 H3BRX3 H3BS03 H3BS84 H3BSA3 H3BSI9 H3BSL6 H3BT32 H3BT40 H3BT53 H3BUI1 H3BV66 L8E9D3 O15360 Q0VAP3 Q0VAP4 Q86U55 Q9Y4Z8 Q9Y4Z9 Q9Y500 NM_001286167.2	1..22 98.9%	+ 16	CENPBD1 NM_145039.3	23..262 98.9%	+ 16	1 0 0	intron-exon
6 Homo Sapiens	AW023846 ANNOTATION OF CHIMERA FUSION GenBank ID: AW023846 FASTA Head Gene (1) Alignment: SLC2A3 | OMIM: 138170 Tail Gene (2) Alignment: FANCA | OMIM: 607139 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 6515 12 - 7920549 7920775 1 1 protein-coding 2175 16 + 89783546 89783576 16 0 oncogene, protein-coding 301 hg38 Updated: 2019-02-07 Owner: ChiTaRS	SLC2A3 F5GYR5 F5GYX0 P11169 NM_006931.2	8..234 100.0%	- 12	FANCA A0PJU8 F5H8D5 H3BM41 H3BNS0 H3BQU1 H3BQU6 H3BQW7 H3BQX1 H3BRX3 H3BS03 H3BS84 H3BSA3 H3BSI9 H3BSL6 H3BT32 H3BT40 H3BT53 H3BUI1 H3BV66 L8E9D3 O15360 Q0VAP3 Q0VAP4 Q86U55 Q9Y4Z8 Q9Y4Z9 Q9Y500 XM_011522946.3	229..255 100.0%	+ 16	1 0 0	exon-intron
7 Homo Sapiens	CF145344 ANNOTATION OF CHIMERA FUSION GenBank ID: CF145344 FASTA Head Gene (1) Alignment: FAM76A Tail Gene (2) Alignment: FANCA | OMIM: 607139 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 199870 1 + 27759563 27760962 2 1 protein-coding 2175 16 - 89784368 89801064 8 0 oncogene, protein-coding 538 hg38 Updated: 2019-04-13 Owner: ChiTaRS	FAM76A B1AJQ5 E9PQL1 Q8TAV0 NM_001143912.1	8..537 100.0%	+ 1	FANCA A0PJU8 F5H8D5 H3BM41 H3BNS0 H3BQU1 H3BQU6 H3BQW7 H3BQX1 H3BRX3 H3BS03 H3BS84 H3BSA3 H3BSI9 H3BSL6 H3BT32 H3BT40 H3BT53 H3BUI1 H3BV66 L8E9D3 O15360 Q0VAP3 Q0VAP4 Q86U55 Q9Y4Z8 Q9Y4Z9 Q9Y500 XM_011522946.3	437..538 98.4%	- 16	1 0 0	exon-intron
8 Homo Sapiens	BF334909 ANNOTATION OF CHIMERA FUSION GenBank ID: BF334909 FASTA Head Gene (1) Alignment: FANCA | OMIM: 607139 Tail Gene (2) Alignment: FANCA | OMIM: 607139 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 2175 16 - 89811314 89811377 40 0 oncogene, protein-coding 2175 16 + 89811209 89811341 3 0 oncogene, protein-coding 188 hg38 Updated: 2019-02-20 Owner: ChiTaRS	FANCA A0PJU8 F5H8D5 H3BM41 H3BNS0 H3BQU1 H3BQU6 H3BQW7 H3BQX1 H3BRX3 H3BS03 H3BS84 H3BSA3 H3BSI9 H3BSL6 H3BT32 H3BT40 H3BT53 H3BUI1 H3BV66 L8E9D3 O15360 Q0VAP3 Q0VAP4 Q86U55 Q9Y4Z8 Q9Y4Z9 Q9Y500 XM_011522946.3	2..63 96.8%	- 16	FANCA A0PJU8 F5H8D5 H3BM41 H3BNS0 H3BQU1 H3BQU6 H3BQW7 H3BQX1 H3BRX3 H3BS03 H3BS84 H3BSA3 H3BSI9 H3BSL6 H3BT32 H3BT40 H3BT53 H3BUI1 H3BV66 L8E9D3 O15360 Q0VAP3 Q0VAP4 Q86U55 Q9Y4Z8 Q9Y4Z9 Q9Y500 XM_011522946.3	56..188 100.0%	+ 16	1 0 0	intron-intron
9 Homo Sapiens	AV686784 ANNOTATION OF CHIMERA FUSION GenBank ID: AV686784 FASTA Head Gene (1) Alignment: FANCA | OMIM: 607139 Tail Gene (2) Alignment: GPC5 | OMIM: 602446 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 2175 16 - 89798385 89798911 1 1 oncogene, protein-coding 2262 13 - 91950255 91950284 2 0 oncogene, tumor suppressor, protein-coding 387 hg38 Updated: 2019-01-31 Owner: ChiTaRS	FANCA A0PJU8 F5H8D5 H3BM41 H3BNS0 H3BQU1 H3BQU6 H3BQW7 H3BQX1 H3BRX3 H3BS03 H3BS84 H3BSA3 H3BSI9 H3BSL6 H3BT32 H3BT40 H3BT53 H3BUI1 H3BV66 L8E9D3 O15360 Q0VAP3 Q0VAP4 Q86U55 Q9Y4Z8 Q9Y4Z9 Q9Y500 NM_001018112.2	1..209 100.0%	- 16	GPC5 A0A087WX13 A0A087WX91 P78333 XM_017020435.2	207..234 96.5%	- 13	1 0 0	exon-intron
10 Homo Sapiens	BF744199 ANNOTATION OF CHIMERA FUSION GenBank ID: BF744199 FASTA Head Gene (1) Alignment: SPG7 | OMIM: 602783 Tail Gene (2) Alignment: FANCA | OMIM: 607139 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 6687 16 - 89534977 89535551 9 0 oncogene, protein-coding 2175 16 - 89768795 89768862 27 0 oncogene, protein-coding 645 hg38 Updated: 2019-02-20 Owner: ChiTaRS	SPG7 A0A087X0F5 A0A2R8Y3M4 A0A2R8Y4L0 A0A2R8Y4L7 A0A2R8Y4M0 A0A2R8Y4M8 A0A2R8Y4Y7 A0A2R8Y4Z7 A0A2R8Y530 A0A2R8Y617 A0A2R8Y632 A0A2R8Y6E8 A0A2R8Y6K2 A0A2R8Y6Z7 A0A2R8Y726 A0A2R8Y729 A0A2R8Y7B8 A0A2R8Y7E2 A0A2R8Y7N2 A0A2R8Y856 A0A2R8YCU3 A0A2R8YDM8 A0A2R8YDQ1 A0A2R8YDS3 A0A2R8YDU1 A0A2R8YDW8 A0A2R8YEH4 A0A2R8YFF4 A0A2R8YFJ7 A0A2R8YFN9 A0A2R8YFQ9 A0A2R8YFW4 A0A2R8YG79 A0A2R8YG90 A0A2R8YGV4 A0A2R8YGZ0 A0A2U3TZH1 H3BMP1 H3BNE4 H3BTR8 H3BTY6 J3KRF6 O43535 Q16161 Q9UQ90 XR_001751972.2	8..581 99.2%	- 16	FANCA A0PJU8 F5H8D5 H3BM41 H3BNS0 H3BQU1 H3BQU6 H3BQW7 H3BQX1 H3BRX3 H3BS03 H3BS84 H3BSA3 H3BSI9 H3BSL6 H3BT32 H3BT40 H3BT53 H3BUI1 H3BV66 L8E9D3 O15360 Q0VAP3 Q0VAP4 Q86U55 Q9Y4Z8 Q9Y4Z9 Q9Y500 XM_011522946.3	578..645 100.0%	- 16	1 0 0	intron-intron

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