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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'DRC3'

Total of fusion sequences: 6 (from 1493742 parsed EST/mRNAs. Last update 2019-12-05 16:32:10)

Organism Fusion:
Graphical View,
Annotation,
PPI network 		Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y) 		Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences		 Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript		 Start1..End1
Ident1% 		Strand1
Chrom1 		Name(s)2,
transcript		 Start2..End2
Ident2% 		Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: NM_031294 FASTA
UniProtKB: B3KSC6 cDNA FLJ35998 fis, clone TESTI2015092, highly similar to Leucine-rich repeat-containing protein 48
UniProtKB: Q9H069 Dynein regulatory complex subunit 3 (Leucine-rich repeat-containing protein 48)
Fusion Gene(s): DRC3 LRRC48
Head Gene (1) Alignment: DRC3 Tail Gene (2) Alignment: ATPAF2 | OMIM: 608918 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
8345017+1797281318016889151protein-coding9164717+180171721801718590protein-coding 2094 hg38
Updated: 2019-01-08
Owner: ChiTaRS
NM_001130090.1		1..2080
100.0%		+
17
XR_001752677.2		2081..2094
100.0%		+
17		1
0
0		exon-intron

Hi-C contacts of chimeric junction

Fusion Gene1 chromosome1 junction start1 junction end1 Hi-C point1 Δ1 Gene2 chromosome2 junction start2 junction end2 Hi-C point2 Δ2 Cell lines (Cellosaurus ID)
2319--32-825--33-34
NM_031294 DRC3 17 18016888 18016889 18016686 202 ATPAF2 17 18017172 18017173 18026686 9513 NHEK/SV3 (CVCL_9Q50)
2
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: NM_001130090 FASTA
UniProtKB: B3KSC6 cDNA FLJ35998 fis, clone TESTI2015092, highly similar to Leucine-rich repeat-containing protein 48
UniProtKB: Q9H069 Dynein regulatory complex subunit 3 (Leucine-rich repeat-containing protein 48)
Fusion Gene(s): DRC3 LRRC48
Head Gene (1) Alignment: DRC3 Tail Gene (2) Alignment: ATPAF2 | OMIM: 608918 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
8345017+1797281318016889151protein-coding9164717+180171721801718590protein-coding 2183 hg38
Updated: 2019-01-08
Owner: ChiTaRS
NM_001130090.1		1..2169
100.0%		+
17
XR_001752677.2		2170..2183
100.0%		+
17		1
0
0		exon-intron

Hi-C contacts of chimeric junction

Fusion Gene1 chromosome1 junction start1 junction end1 Hi-C point1 Δ1 Gene2 chromosome2 junction start2 junction end2 Hi-C point2 Δ2 Cell lines (Cellosaurus ID)
2319--32-825--33-34
NM_001130090 DRC3 17 18016888 18016889 18016686 202 ATPAF2 17 18017172 18017173 18026686 9513 NHEK/SV3 (CVCL_9Q50)
3
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: DV054309 FASTA
Head Gene (1) Alignment: 9530002B09Rik Tail Gene (2) Alignment: Drc3 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
774324+122689344122705125517466511+603562536035633000 966 mm10
Updated: 2019-06-16
Owner: ChiTaRS
NM_023865.3		21..750
99.8%		+
4
NM_029044.2		748..824
97.4%		+
11		1
0
0		exon-intron
4
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: BU921053 FASTA
Head Gene (1) Alignment: Gm5148 Tail Gene (2) Alignment: Drc3 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
3814383+3771473537715228107466511-603794386037946200 600 mm10
Updated: 2019-06-15
Owner: ChiTaRS
Gm5148
Q8BGG2
NM_198657.2		1..494
100.0%		+
3
NM_029044.2		477..501
100.0%		-
11		1
0
0		intron-intron
5
Mus musculus

ANNOTATION OF CHIMERA FUSION

GenBank ID: CA457110 FASTA
Head Gene (1) Alignment: Gm44805 Tail Gene (2) Alignment: Drc3 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1058862997-1967809419681480107466511-603794376037946500 947 mm10
Updated: 2019-06-12
Owner: ChiTaRS
Gm44805
NM_001309799.1		38..565
99.1%		-
7
NM_029044.2		560..588
96.6%		-
11		1
0
0		intron-intron
6
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: CD652983 FASTA
Head Gene (1) Alignment: TSPAN3 | OMIM: 613134 Tail Gene (2) Alignment: DRC3 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1009915-770467537705622571protein-coding8345017-180088871800893311protein-coding 769 hg38
Updated: 2019-02-17
Owner: ChiTaRS
XM_017021857.1		12..762
99.8%		-
15
XM_011524022.2		745..769
100.0%		-
17		1
0
0		exon-exon

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