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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'Ctnnd2'

Total of fusion sequences: 11 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism Fusion:
Graphical View,
Annotation,
PPI network 		Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y) 		Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences		 Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript		 Start1..End1
Ident1% 		Strand1
Chrom1 		Name(s)2,
transcript		 Start2..End2
Ident2% 		Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: NM_001332 FASTA
UniProtKB: Q9UQB3 Catenin delta-2 (Delta-catenin) (GT24) (Neural plakophilin-related ARM-repeat protein) (NPRAP) (Neurojungin)
Fusion Gene(s): CTNND2 NPRAP
Head Gene (1) Alignment: CTNND2 | OMIM: 604275 Tail Gene (2) Alignment: LOC105374654 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
15015-1098177311904446220oncogene,
protein-coding		1053746545-109718361097371300ncRNA 5888 hg38
Updated: 2019-04-14
Owner: ChiTaRS
XM_005248251.3		1..4010
100.0%		-
5		 LOC105374654
XR_925791.2		4011..5888
100.0%		-
5		1
0
0		intron-intron
2
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: N67406 FASTA
Head Gene (1) Alignment: CTNND2 | OMIM: 604275 Tail Gene (2) Alignment: RPL37A | OMIM: 613314 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
15015+1137478111374811170oncogene,
protein-coding		61682-21649994921650146721protein-coding 234 hg38
Updated: 2019-02-08
Owner: ChiTaRS
NR_109988.1		1..31
100.0%		+
5
NM_000998.4		21..229
100.0%		-
2		3
0
589		intron-exon
3
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: AW020311 FASTA
Head Gene (1) Alignment: RPL37A | OMIM: 613314 Tail Gene (2) Alignment: CTNND2 | OMIM: 604275 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
61682+21649936021650146741protein-coding15015-113747861137481170oncogene,
protein-coding		 269 hg38
Updated: 2019-02-07
Owner: ChiTaRS
NM_000998.4		6..254
100.0%		+
2
XM_005248252.2		244..269
100.0%		-
5		3
0
0		exon-intron
4
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: BI491370 FASTA
Head Gene (1) Alignment: CTNND2 | OMIM: 604275 Tail Gene (2) Alignment: RPL37A | OMIM: 613314 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
15015+1137478711374811170oncogene,
protein-coding		61682-21649936021650146731protein-coding 268 hg38
Updated: 2019-02-17
Owner: ChiTaRS
NR_109988.1		1..25
100.0%		+
5
NM_000998.4		15..263
100.0%		-
2		3
0
0		intron-exon
5
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: DL051970 FASTA
Head Gene (1) Alignment: CTNND2 | OMIM: 604275 Tail Gene (2) Alignment: KLHL14 | OMIM: 613772 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
15015+112078001120782200oncogene,
protein-coding		5756518-326732973267378111protein-coding 498 hg38
Updated: 2019-03-03
Owner: ChiTaRS
XM_005248251.3		7..29
100.0%		+
5
NM_020805.2		14..498
100.0%		-
18		1
0
0		intron-exon
6
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: AA169430 FASTA
Head Gene (1) Alignment: CTNND2 | OMIM: 604275 Tail Gene (2) Alignment: KLHL14 | OMIM: 613772 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
15015+1120780011207822140oncogene,
protein-coding		5756518-326732973267378191protein-coding 498 hg38
Updated: 2019-02-17
Owner: ChiTaRS
NR_109988.1		7..29
100.0%		+
5
NM_020805.2		14..498
100.0%		-
18		1
0
0		intron-exon
7
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: AY516247 FASTA
Head Gene (1) Alignment: CTNND2 | OMIM: 604275 Tail Gene (2) Alignment: HDAC8 | OMIM: 300269 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
15015+115249001152492000oncogene,
protein-coding		55869X-724630167246332111protein-coding 105 hg38
Updated: 2019-03-03
Owner: ChiTaRS
XM_005248251.3		41..61
100.0%		+
5
XR_002958782.1		58..105
96.9%		-
X		1
0
0		intron-exon
8
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: EC560378 FASTA
Head Gene (1) Alignment: CTNND2 | OMIM: 604275 Tail Gene (2) Alignment: RAD23B | OMIM: 600062 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
15015-112489681124898700oncogene,
protein-coding		58879-10733080910733089111oncogene,
tumor suppressor,
protein-coding		 87 hg38
Updated: 2019-03-25
Owner: ChiTaRS
XM_005248251.3		2..21
100.0%		-
5
NM_001244724.1		4..79
98.7%		-
9		1
0
0		intron-exon
9
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: DL053214 FASTA
Head Gene (1) Alignment: LOC105372287 Tail Gene (2) Alignment: CTNND2 | OMIM: 604275 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
10537228719-142858681428589210ncRNA15015+110366711103677720oncogene,
protein-coding		 368 hg38
Updated: 2016-11-30
Owner: ChiTaRS
LOC105372287 1..25
100.0%		-
19		 6..110
96.9%		+
5		1
0
0		intron-intron
10
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: FN066342 FASTA
Head Gene (1) Alignment: PPIC-AS1 Tail Gene (2) Alignment: CTNND2 | OMIM: 604275 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
1079864475-12304629112304635600ncRNA15015+115370471153706600oncogene,
protein-coding		 127 hg38
Updated: 2019-03-03
Owner: ChiTaRS
PPIC-AS1
XR_001742868.1		85..119
96.7%		-
5
XM_005248251.3		108..127
100.0%		+
5		1
0
0		intron-intron

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