Result for the search of Gene Name/NCBI ID(s): 'Col4a2'

Total of fusion sequences: 9 (from 6,491,097 parsed EST/mRNAs. Last update: 2020-08-30 12:24:27)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	SplGraphs AK300060 ANNOTATION OF CHIMERA FUSION GenBank ID: AK300060 FASTA UniProtKB: B4DT57 cDNA FLJ61383, highly similar to Serine/threonine-protein kinase 24 Head Gene (1) Alignment: COL4A2 | OMIM: 120090 Tail Gene (2) Alignment: STK24 | OMIM: 604984 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1284 13 + 110307285 110308123 3 1 protein-coding 8428 13 - 98452754 98519474 11 1 protein-coding 2060 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Pkinase (PF00069, IPR000719) 264 139 389 1.4e-75 240.100 Protein kinase domain DUF1241 (PF06840, IPR009652) 150 475 536 5.6e-07 15.500 Protein of unknown function (DUF1241) Updated: 2019-02-20 Owner: ChiTaRS	COL4A2 A0A024RDW8 A0A087WY39 A0A3B3IRV2 A0A3B3IS04 A0A3B3IS47 A0A3B3IT80 A0A3B3ITN7 A0A3B3ITQ8 A2A352 P08572 NM_001846.3	1..387 99.0%	+ 13	STK24 B4DR80 H0Y630 L8E7H5 Q5JV98 Q5JV99 Q5U0E6 Q6FG81 Q6P0Y1 Q9Y6E0 XM_024449426.1	387..2060 99.9%	- 13	1 0 0	exon-exon
2 Homo Sapiens	ChimerDB DA820540 ANNOTATION OF CHIMERA FUSION GenBank ID: DA820540 FASTA Head Gene (1) Alignment: COL4A2 | OMIM: 120090 Tail Gene (2) Alignment: STK24 | OMIM: 604984 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1284 13 + 110307285 110308123 3 1 protein-coding 8428 13 - 98519334 98519474 2 1 protein-coding 527 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Pkinase (PF00069, IPR000719) 264 139 389 8.4e-76 240.900 Protein kinase domain DUF1241 (PF06840, IPR009652) 150 475 537 4e-07 16.000 Protein of unknown function (DUF1241) Updated: 2019-02-21 Owner: ChiTaRS	COL4A2 A0A024RDW8 A0A087WY39 A0A3B3IRV2 A0A3B3IS04 A0A3B3IS47 A0A3B3IT80 A0A3B3ITN7 A0A3B3ITQ8 A2A352 P08572 NM_001846.3	1..387 99.0%	+ 13	STK24 B4DR80 H0Y630 L8E7H5 Q5JV98 Q5JV99 Q5U0E6 Q6FG81 Q6P0Y1 Q9Y6E0 XM_024449426.1	387..527 100.0%	- 13	1 0 0	exon-exon
3 Homo Sapiens	BF921767 ANNOTATION OF CHIMERA FUSION GenBank ID: BF921767 FASTA Head Gene (1) Alignment: COL4A2 | OMIM: 120090 Tail Gene (2) Alignment: COL4A2 | OMIM: 120090 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1284 13 + 110473215 110473480 29 0 protein-coding 1284 13 + 110469322 110469505 21 1 protein-coding 446 hg38 Updated: 2019-02-20 Owner: ChiTaRS	COL4A2 A0A024RDW8 A0A087WY39 A0A3B3IRV2 A0A3B3IS04 A0A3B3IS47 A0A3B3IT80 A0A3B3ITN7 A0A3B3ITQ8 A2A352 P08572 NM_001846.3	2..268 98.5%	+ 13	COL4A2 A0A024RDW8 A0A087WY39 A0A3B3IRV2 A0A3B3IS04 A0A3B3IS47 A0A3B3IT80 A0A3B3ITN7 A0A3B3ITQ8 A2A352 P08572 NM_001846.3	263..446 99.0%	+ 13	1 0 0	intron-exon	1HiC Hi-C contacts of chimeric junction Fusion Gene1 chromo- some1 junction start1 junction end1 Hi-C point1 Δ1 Gene2 chromo- some2 junction start2 junction end2 Hi-C point2 Δ2 Cell lines (Cell_ID,) PubMed(,s) 2 3 19 - - 32 - 8 25 - - 33 - 34 - BF921767 COL4A2 13 110473475 110473480 110477653 4173 COL4A2 13 110469322 110469327 110467653 1669 IMR-90 (CVCL_0347), hTERT-RPE1 (CVCL_4388) 25497547, 27432957
4 Homo Sapiens	EC560715 ANNOTATION OF CHIMERA FUSION GenBank ID: EC560715 FASTA Head Gene (1) Alignment: COL4A2 | OMIM: 120090 Tail Gene (2) Alignment: COX1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1284 13 - 110482866 110482964 0 0 protein-coding 4512 MT - 6540 6647 1 1 protein-coding 126 hg38 Updated: 2019-03-25 Owner: ChiTaRS	COL4A2 A0A024RDW8 A0A087WY39 A0A3B3IRV2 A0A3B3IS04 A0A3B3IS47 A0A3B3IT80 A0A3B3ITN7 A0A3B3ITQ8 A2A352 P08572 NM_001846.3	1..24 100.0%	- 13	COX1 A0A088RIW4 A0A0N6WBT4 A0A0N7B165 A0A0N7B166 A0A0N7B9D3 A0A0N7BB20 A0A0N7BB96 A0A0N7BBR2 A0A0N7BBS2 A0A0N7D6W9 A0A0N7D823 A0A1L4AB37 A0A3Q8TNE4 A0A3Q8TNE7 A0A3Q8TNI2 A0A3Q8TNJ6 A0A3Q8TNK2 A0A3S5HKX6 A0A3S8TMP6 A0A3S8TMR4 A0A3S8TMT3 A1DTW0 A1XP63 B1W8A6 B5LMI2 D2Y6W4 F8U4W0 M9Z2G2 P00395 Q4F260 Q4G7F8 Q4G7P9 Q4G9M5 Q4GAL3 Q4GBG2 Q4GGC8 Q4GIJ5 Q4GKW4 Q4GR21 Q4GTJ2 Q4GUT4 Q4GV90 Q4GVU8 Q4R1L4 Q5XS99 Q5XT74 Q6RKZ7 Q6RNG4 Q7Y7K9 Q7YCF0 Q8WCX5 Q957U9 Q9B1J9 Q9B2V2 U3M9N8 U3M9P0 U3M9P1 U3M9P5 U3M9P7 U3M9Q0 U3M9Q1 U3M9Q3 U3M9Q4 U3M9Q6 U3M9Q7 U3M9Q8 U3M9Q9 U3M9R0 U3M9R1 U3M9R2 U3M9R3 U3M9R4 U3M9R5 U3M9R6 U3M9R9 U3M9S0 U3M9T2 U3M9T3 U3M9T5 U3M9T6 U3M9T7 U3M9T9 U3MA05 U3MA07 U3MA12 U3MA14 U3MA16 U3MA18 U3MA21 U3MA23 U3MA26 U3MA28 U5YWV7 W1IAG5 W1IAG9 W1IAH8 W1IAR2 W1IAS0 W1IC92 W1IC97 W1ICA2 W1ICU3 W1ICV6 W1IDY4	19..126 100.0%	- MT	1 0 0	intron-exon
5 Homo Sapiens	AV689450 ANNOTATION OF CHIMERA FUSION GenBank ID: AV689450 FASTA Head Gene (1) Alignment: COL4A2 | OMIM: 120090 Tail Gene (2) Alignment: SORCS1 | OMIM: 606283 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1284 13 + 110512090 110512721 48 1 protein-coding 114815 10 + 107168440 107168459 1 0 protein-coding 648 hg38 Updated: 2019-02-07 Owner: ChiTaRS	COL4A2 A0A024RDW8 A0A087WY39 A0A3B3IRV2 A0A3B3IS04 A0A3B3IS47 A0A3B3IT80 A0A3B3ITN7 A0A3B3ITQ8 A2A352 P08572 NM_001846.3	1..628 99.6%	+ 13	SORCS1 A0A087WTI0 A0A087WTQ9 A0A0A0MRC2 A8K182 E6Y3F9 E6Y3G0 H7C2U3 Q8WY21 X6R7D6 XM_017015617.1	628..647 100.0%	+ 10	1 0 0	exon-intron
6 Homo Sapiens	AW362574 ANNOTATION OF CHIMERA FUSION GenBank ID: AW362574 FASTA Head Gene (1) Alignment: ENO1 | OMIM: 172430 Tail Gene (2) Alignment: COL4A2 | OMIM: 120090 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 2023 1 + 8866373 8866426 6 1 oncogene, protein-coding 1284 13 - 110469247 110472960 21 1 protein-coding 166 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Enolase_N (PF03952, IPR020811) 131 3 134 1.2e-64 202.500 Enolase, N-terminal domain Enolase_C (PF00113, IPR020810) 296 142 193 2.3e-27 82.000 Enolase, C-terminal TIM barrel domain Collagen (PF01391, IPR008160) 60 212 270 7.7e-06 11.900 Collagen triple helix repeat (20 copies) C4 (PF01413, IPR001442, SM00111) 111 1025 1130 2.3e-39 120.500 C-terminal tandem repeated domain in type 4 procollagen Updated: 2019-02-20 Owner: ChiTaRS	ENO1 A0A024R4F1 A0A2R8Y6G6 A0A2R8Y6I8 A0A2R8Y798 A0A2R8Y879 A0A2R8YEG5 A0A2R8YEM5 A4QMW8 K7EM90 K7ERS8 P06733 NM_001353346.2	1..54 98.2%	+ 1	COL4A2 A0A024RDW8 A0A087WY39 A0A3B3IRV2 A0A3B3IS04 A0A3B3IS47 A0A3B3IT80 A0A3B3ITN7 A0A3B3ITQ8 A2A352 P08572 NM_001846.3	49..159 98.2%	- 13	1 0 0	exon-exon
7 Homo Sapiens	AI089919 ANNOTATION OF CHIMERA FUSION GenBank ID: AI089919 FASTA Head Gene (1) Alignment: COL4A2 | OMIM: 120090 Tail Gene (2) Alignment: SMG7 | OMIM: 610964 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1284 13 - 110370201 110370222 4 0 protein-coding 9887 1 - 183553814 183554191 1 1 protein-coding 405 hg38 Updated: 2019-01-12 Owner: ChiTaRS	COL4A2 A0A024RDW8 A0A087WY39 A0A3B3IRV2 A0A3B3IS04 A0A3B3IS47 A0A3B3IT80 A0A3B3ITN7 A0A3B3ITQ8 A2A352 P08572 NM_001846.3	10..31 95.5%	- 13	SMG7 B1ALB4 D6R9J3 D6RAD0 E9PBK2 E9PD50 E9PEK3 Q6TV06 Q92540 XM_011510205.3	28..405 99.0%	- 1	1 0 0	intron-exon
8 Homo Sapiens	AA643818 ANNOTATION OF CHIMERA FUSION GenBank ID: AA643818 FASTA Head Gene (1) Alignment: COL4A2 | OMIM: 120090 Tail Gene (2) Alignment: CARS2 | OMIM: 612800 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1284 13 + 110339913 110340168 0 0 protein-coding 79587 13 + 110687615 110687690 0 0 protein-coding 344 hg38 Updated: 2019-04-13 Owner: ChiTaRS	COL4A2 A0A024RDW8 A0A087WY39 A0A3B3IRV2 A0A3B3IS04 A0A3B3IS47 A0A3B3IT80 A0A3B3ITN7 A0A3B3ITQ8 A2A352 P08572 NM_001846.3	7..260 95.8%	+ 13	CARS2 A0A087WWV1 F5H579 F5H623 H0YFF0 H0YFV1 H0YGF2 Q9HA77 NR_147941.1	261..337 95.8%	+ 13	1 0 0	intron-intron
9 Homo Sapiens	BF991446 ANNOTATION OF CHIMERA FUSION GenBank ID: BF991446 FASTA Head Gene (1) Alignment: AOC1 | OMIM: 104610 Tail Gene (2) Alignment: COL4A2 | OMIM: 120090 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 26 7 + 150861038 150861166 7 1 protein-coding 1284 13 - 110357471 110424790 45 0 protein-coding 313 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Collagen (PF01391, IPR008160) 60 829 891 6.4e-12 31.400 Collagen triple helix repeat (20 copies) C4 (PF01413, IPR001442, SM00111) 111 2263 2368 5.4e-39 119.300 C-terminal tandem repeated domain in type 4 procollagen Updated: 2019-02-22 Owner: ChiTaRS	AOC1 C9J0G8 C9J2J4 P19801 XM_017011944.1	1..129 100.0%	+ 7	COL4A2 A0A024RDW8 A0A087WY39 A0A3B3IRV2 A0A3B3IS04 A0A3B3IS47 A0A3B3IT80 A0A3B3ITN7 A0A3B3ITQ8 A2A352 P08572 NM_001846.3	130..267 97.1%	- 13	1 0 0	exon-intron

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