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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'Col3a1'

Total of fusion sequences: 27 (from 1528141 parsed EST/mRNAs. Last update 2020-01-13 13:10:48)

Organism Fusion:
Graphical View,
Annotation,
PPI network
Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y)
Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences
Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript
Start1..End1
Ident1%
Strand1
Chrom1
Name(s)2,
transcript
Start2..End2
Ident2%
Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Mus musculus
SplGraphs
NM_009930.2
1..283
99.7%
+
1

NM_009930.2
273..549
100.0%
+
1
0
16631
9689
exon-exon
2
Mus musculus
SplGraphs
NM_007742.4
12..88
100.0%
+
11

NM_009930.2
78..535
100.0%
+
1
1
0
0
exon-exon
3
Mus musculus
SplGraphs
NM_001081171.2
1..351
100.0%
-
2

NM_009930.2
351..455
100.0%
+
1
1
0
0
exon-exon
4
Mus musculus
SplGraphs 43..109
100.0%
-
17
108..322
100.0%
+
1
1
0
0
exon-exon
5
Mus musculus

NM_009930.2
51..82
96.9%
-
1

NM_009930.2
76..710
98.9%
+
1
0
16631
9689
exon-exon
6
Mus musculus
CT009580.1 1..22
100.0%
-
17

NM_009930.2
16..518
99.7%
-
1
1
0
0
intron-exon
7
Mus musculus
CT009580.1 2..21
100.0%
-
17

NM_009930.2
15..158
100.0%
-
1
1
0
0
intron-exon
8
Mus musculus
1010001N08Rik
ENSMUST00000231895
1..21
100.0%
+
18

NM_009930.2
21..619
99.5%
-
1
1
0
0
intron-exon
9
Mus musculus

NM_009930.2
44..373
99.7%
+
1

NM_001081150.1
360..391
100.0%
+
8
1
0
0
exon-intron
10
Mus musculus
Gm33838
XR_870629.1
10..57
97.2%
-
9

NM_009930.2
25..441
99.3%
-
1
1
0
0
intron-exon

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