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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'Col3a1'

Total of fusion sequences: 27 (from 1,528,141 parsed EST/mRNAs. Last update 2020-01-13 13:10:48)

Organism Fusion:
Graphical View,
Annotation,
PPI network
Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y)
Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences
Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript
Start1..End1
Ident1%
Strand1
Chrom1
Name(s)2,
transcript
Start2..End2
Ident2%
Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
11
Mus musculus

NM_009930.2
24..553
99.5%
+
1

NM_001252679.1
554..585
100.0%
+
5
1
0
0
exon-intron
12
Mus musculus
Gm49575 1..32
100.0%
+
16

NM_009930.2
33..216
97.9%
-
1
1
0
0
intron-exon
13
Mus musculus

NM_146007.2
7..386
97.6%
-
10

NM_009930.2
386..737
98.0%
+
1
1
0
0
exon-exon
14
Mus musculus

NM_009930.2
20..413
99.3%
+
1

XM_006517518.2
413..448
100.0%
-
13
1
0
0
exon-intron
15
Mus musculus

XM_006511935.3
2..25
100.0%
+
9

NM_009930.2
5..517
99.9%
+
1
1
0
0
exon-exon
16
Mus musculus

NM_009930.2
33..430
99.8%
+
1

XM_017322284.1
431..497
97.5%
+
7
1
0
0
exon-intron
17
Mus musculus

NM_009930.2
1..482
100.0%
+
1

NM_001289446.1
450..506
97.5%
+
2
1
0
0
exon-intron
18
Mus musculus

XM_011245830.1
148..190
100.0%
-
16

NM_009930.2
191..632
99.6%
+
1
1
0
0
intron-exon
19
Mus musculus

NM_009930.2
56..924
99.3%
+
1

XM_006527350.3
916..944
96.0%
+
19
1
0
0
exon-intron
20
Mus musculus

XM_017320334.1
1..376
99.8%
+
4

NM_009930.2
370..855
98.8%
+
1
1
0
0
intron-intron

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