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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'Col2a1'

Total of fusion sequences: 11 (from 1493742 parsed EST/mRNAs. Last update 2019-12-05 16:32:10)

Organism Fusion:
Graphical View,
Annotation,
PPI network
Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y)
Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences
Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript
Start1..End1
Ident1%
Strand1
Chrom1
Name(s)2,
transcript
Start2..End2
Ident2%
Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Mus musculus
SplGraphs Col2a1
P28481

NM_031163.3
1..138
100.0%
-
15
Col2a1
P28481

NM_031163.3
133..421
100.0%
-
15
0
1073
1382
exon-exon
2
Mus musculus
Col2a1
P28481

NM_031163.3
5..159
100.0%
+
15
Col2a1
P28481

NM_031163.3
159..323
100.0%
-
15
2
40
50
exon-exon
3
Mus musculus
Col2a1
P28481

NM_031163.3
1..88
98.9%
+
15
Col2a1
P28481

NM_031163.3
79..245
98.2%
-
15
2
40
50
exon-exon
4
Mus musculus

NM_025722.3
1..330
100.0%
-
8
Col2a1
P28481

NM_031163.3
331..487
96.1%
-
15
1
0
0
exon-exon
5
Mus musculus
Col2a1
P28481

NM_031163.3
1..400
99.5%
-
15

NM_001163160.1
372..431
96.5%
-
16
1
0
0
intron-intron
6
Mus musculus
28..251
99.2%
-
7
Col2a1
P28481
235..548
95.8%
-
15
1
0
0
exon-exon
7
Mus musculus
Col2a1
P28481

NM_031163.3
7..259
100.0%
-
15

NM_001099633.1
257..278
100.0%
-
11
1
0
0
exon-intron
8
Mus musculus
Col2a1
P28481

NM_031163.3
7..630
100.0%
-
15

XM_011243291.1
611..636
100.0%
-
10
1
0
0
exon-intron
9
Mus musculus
Col2a1
P28481

NM_031163.3
8..554
100.0%
-
15
Gm41323
XR_875338.2
535..561
100.0%
-
15
1
0
0
exon-intron
10
Mus musculus
Col2a1
P28481

NM_031163.3
9..789
99.9%
-
15
4930474H20Rik
NR_045712.1
771..795
100.0%
-
14
1
0
0
exon-intron

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