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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search: Gene Name/NCBI ID(s): 'Clk1'

Total of fusion sequences: 10 (from 1,393,046 parsed EST/mRNAs. Last update 2019-09-04)

Organism Fusion:
Graphical View,
Annotation,
PPI network
Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y)
Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences
Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript
Start1..End1
Ident1%
Strand1
Chrom1
Name(s)2,
transcript
Start2..End2
Ident2%
Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15-1617
Mus musculus
NR_027854.1
42..112
100.0%
+
1

NR_027854.1
110..625
97.9%
-
1
0
4655
4287
exon-exon
Mus musculus
NM_001042634.2
1..254
97.3%
+
1

NM_001042634.2
251..444
100.0%
+
1
2
56
136
intron-intron
Mus musculus
NM_001042634.2
1..250
99.6%
-
1

NM_001042634.2
247..364
100.0%
-
1
2
56
136
intron-intron
Mus musculus
NM_001304719.1
1..97
100.0%
+
3

NM_001042634.2
94..443
100.0%
-
1
1
0
0
exon-intron
Mus musculus
NM_001042634.2
55..764
99.5%
-
1

NM_001159581.1
706..844
96.2%
+
4
1
0
0
exon-intron
Mus musculus Gm41731
XR_877436.2
1..22
100.0%
-
18

NM_001042634.2
17..472
99.8%
+
1
1
0
0
intron-exon
Mus musculus
XM_006513251.3
39..60
95.0%
-
10

NM_001042634.2
50..776
97.2%
-
1
1
0
0
intron-intron
Mus musculus AC151280.3 11..35
100.0%
-
17

NM_001042634.2
26..454
100.0%
+
1
1
0
0
intron-exon
Mus musculus
NM_001042634.2
1..4839
100.0%
-
1

XM_006511650.3
4838..4862
97.0%
+
9
1
0
0
exon-intron
Mus musculus
NM_001042634.2
1..38
96.7%
-
1

NM_133672.3
13..461
100.0%
+
10
1
0
0
intron-exon

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