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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'Chd1'

Total of fusion sequences: 5 (from 2006899 parsed EST/mRNAs. Last update 2020-01-28 15:35:44)

Organism Fusion:
Graphical View,
Annotation,
PPI network
Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y)
Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences
Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript
Start1..End1
Ident1%
Strand1
Chrom1
Name(s)2,
transcript
Start2..End2
Ident2%
Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Mus musculus

XM_006495933.3
4..673
99.9%
-
1

NM_007690.3
550..790
95.3%
-
17
1
0
0
exon-intron
2
Mus musculus

NM_007690.3
24..330
99.4%
+
17
Gemin6
Q9CX53

XM_011246581.2
297..627
97.9%
+
17
1
0
0
exon-intron
3
Mus musculus

NM_007690.3
2..392
100.0%
+
17
Gm31313
XR_873485.1
371..404
95.0%
+
13
1
0
0
intron-exon
4
Mus musculus

XM_006527313.2
10..32
100.0%
+
19

NM_007690.3
22..310
97.6%
-
17
1
0
0
intron-intron
5
Mus musculus

XR_001782118.1
1..26
100.0%
+
17

NM_007690.3
19..881
98.3%
-
17
1
0
0
intron-exon

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