Result for the search of Gene Name/NCBI ID(s): 'Cdh12'

Total of fusion sequences: 20 (from 12,143,238 parsed EST/mRNAs. Last update: 2021-04-05 16:54:11)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Mus musculus	BC005429 ANNOTATION OF CHIMERA FUSION GenBank ID: BC005429 FASTA UniProtKB: Q99K64 Matn2 protein Fusion Gene(s): Matn2 Head Gene (1) Alignment: Matn2 Tail Gene (2) Alignment: Cdh12 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 17181 15 + 34306811 34436034 19 1 protein-coding 215654 15 + 20929513 20929563 0 0 3273 mm10 Updated: 2019-06-15 Owner: ChiTaRS	Matn2 A0A0A0MQM7 A0A2I3BRF3 A0A2I3BRV5 O08746 Q3TQ80 Q569V0 Q8C435 Q99K64 NM_016762.2	1..3239 99.7%	+ 15	Cdh12 Q5RJH3 XM_011245345.2	3238..3273 100.0%	+ 15	1 0 0	exon-intron
2 Mus musculus	CF583144 ANNOTATION OF CHIMERA FUSION GenBank ID: CF583144 FASTA Head Gene (1) Alignment: Cdh12 Tail Gene (2) Alignment: 9530027J09Rik Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 215654 15 - 21191384 21191412 0 0 100500713 X - 48277418 48282450 2 1 915 mm10 Updated: 2019-06-12 Owner: ChiTaRS	Cdh12 Q5RJH3 XM_011245345.2	1..29 100.0%	- 15	9530027J09Rik NR_045916.1	29..914 99.1%	- X	1 0 0	intron-exon
3 Mus musculus	BQ264911 ANNOTATION OF CHIMERA FUSION GenBank ID: BQ264911 FASTA Head Gene (1) Alignment: Cdh12 Tail Gene (2) Alignment: Hnrnpk Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 215654 15 - 21191384 21191412 0 0 15387 13 + 58391238 58391799 1 1 protein-coding 591 mm10 Updated: 2019-06-12 Owner: ChiTaRS	Cdh12 Q5RJH3 XM_011245345.2	1..29 100.0%	- 15	Hnrnpk A0A286YCM2 A0A286YDH1 A0A286YDM3 A0A286YE41 A0A286YEC4 B2M1R6 H3BJ43 H3BJS9 H3BK96 H3BKD0 H3BKI8 H3BLL4 H3BLP7 P61979 Q3TG17 Q3TJ38 Q3TL71 Q3TUA1 Q3U6X2 Q3U9Q3 Q5FWJ5 Q8BT23 NM_001301341.1	29..591 99.2%	+ 13	1 0 0	intron-exon
4 Mus musculus	BI663758 ANNOTATION OF CHIMERA FUSION GenBank ID: BI663758 FASTA Head Gene (1) Alignment: Shisa2 Tail Gene (2) Alignment: Cdh12 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 219134 14 + 59631053 59631660 1 1 215654 15 + 21540860 21540883 0 0 620 mm10 Updated: 2019-06-05 Owner: ChiTaRS	Shisa2 Q8QZV2 NM_145463.5	1..606 99.7%	+ 14	Cdh12 Q5RJH3 XM_011245345.2	597..619 100.0%	+ 15	1 0 0	exon-intron
5 Mus musculus	CF580667 ANNOTATION OF CHIMERA FUSION GenBank ID: CF580667 FASTA Head Gene (1) Alignment: Cdh12 Tail Gene (2) Alignment: Amy2a5 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 215654 15 - 21191379 21191409 0 0 109959 3 + 113249183 113253332 5 1 874 mm10 Updated: 2019-06-12 Owner: ChiTaRS	Cdh12 Q5RJH3 XM_011245345.2	2..32 100.0%	- 15	Amy2a5 NM_001042711.2	28..715 99.2%	+ 3	1 0 0	intron-exon
6 Mus musculus	CB057524 ANNOTATION OF CHIMERA FUSION GenBank ID: CB057524 FASTA Head Gene (1) Alignment: Tomm6 Tail Gene (2) Alignment: Cdh12 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 66119 17 - 47686740 47688012 3 1 protein-coding 215654 15 + 20896633 20896653 0 0 509 mm10 Updated: 2019-06-12 Owner: ChiTaRS	Tomm6 Q9CQN3 NM_025365.3	1..485 99.8%	- 17	Cdh12 Q5RJH3 XM_011245345.2	478..498 100.0%	+ 15	1 0 0	exon-intron
7 Mus musculus	CJ133539 ANNOTATION OF CHIMERA FUSION GenBank ID: CJ133539 FASTA Head Gene (1) Alignment: Adam22 Tail Gene (2) Alignment: Cdh12 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 11496 5 + 8264086 8264380 0 0 protein-coding 215654 15 + 21448969 21449271 0 0 322 mm10 Updated: 2019-06-16 Owner: ChiTaRS	Adam22 A0A0G2JE04 A0A0G2JFA9 A4FUT9 D3YUP9 D3YUQ0 D6QSS8 F6PZ09 F6SK63 F6TDF4 F6VJ78 F6XIT3 F6XRZ6 F7AYY9 F7BXL9 F7BZ55 F7CDH3 F7DAP1 Q9R1V6 S4R1S5 XM_006503528.3	2..298 97.8%	+ 5	Cdh12 Q5RJH3 XM_011245345.2	7..312 97.0%	+ 15	1 0 0	intron-intron
8 Mus musculus	CK128354 ANNOTATION OF CHIMERA FUSION GenBank ID: CK128354 FASTA Head Gene (1) Alignment: Cdh12 Tail Gene (2) Alignment: Smim10l1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 215654 15 - 21191374 21191409 0 0 381820 6 - 133105941 133106706 1 1 protein-coding 802 mm10 Updated: 2019-06-11 Owner: ChiTaRS	Cdh12 Q5RJH3 XM_011245345.2	7..42 97.3%	- 15	Smim10l1 A0A087WNQ7 A0A087WNX5 A0A087WPM1 E9Q3K4 Q3TCB7 NM_001163445.2	34..787 99.5%	- 6	1 0 0	intron-exon
9 Mus musculus	CF582537 ANNOTATION OF CHIMERA FUSION GenBank ID: CF582537 FASTA Head Gene (1) Alignment: Cdh12 Tail Gene (2) Alignment: Aga Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 215654 15 - 21191380 21191412 0 0 11593 8 - 53515947 53523422 6 1 927 mm10 Updated: 2019-06-12 Owner: ChiTaRS	Cdh12 Q5RJH3 XM_011245345.2	1..33 100.0%	- 15	Aga A0A1B0GRE4 A2RSS6 B7ZNK6 Q64191 XM_006509249.3	31..821 98.6%	- 8	1 0 0	intron-exon
10 Mus musculus	CK788563 ANNOTATION OF CHIMERA FUSION GenBank ID: CK788563 FASTA Head Gene (1) Alignment: Gm28043 Tail Gene (2) Alignment: Cdh12 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 106014251 17 - 29693460 29693997 0 0 215654 15 + 21191380 21191412 0 0 570 mm10 Updated: 2019-06-11 Owner: ChiTaRS	Gm28043 E0CXC2 NR_132314.1	1..538 100.0%	- 17	Cdh12 Q5RJH3 XM_011245345.2	536..568 100.0%	+ 15	1 0 0	intron-intron

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