Result for the search of Gene Name/NCBI ID(s): 'Cand1'

Total of fusion sequences: 5 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Mus musculus	BI735450 ANNOTATION OF CHIMERA FUSION GenBank ID: BI735450 FASTA Head Gene (1) Alignment: Cand1 Tail Gene (2) Alignment: Cand1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 71902 10 + 119216604 119216678 1 1 protein-coding 71902 10 - 119213739 119216629 4 1 protein-coding 613 mm10 Updated: 2019-05-28 Owner: ChiTaRS	Cand1 D3YWC5 Q3UMI9 Q6ZQ38 NM_027994.1	19..92 98.7%	+ 10	Cand1 D3YWC5 Q3UMI9 Q6ZQ38 NM_027994.1	91..613 99.1%	- 10	1 0 0	exon-exon	3HiC Hi-C contacts of chimeric junction Fusion Gene1 chromo- some1 junction start1 junction end1 Hi-C point1 Δ1 Gene2 chromo- some2 junction start2 junction end2 Hi-C point2 Δ2 Cell lines (Cell_ID,) PubMed(,s) 2 3 19 - - 32 - 8 25 - - 33 - 34 - BI735450 Cand1 10 119216677 119216678 119210000 6677 Cand1 10 119213739 119213740 119210000 3739 Patski (CVCL_Y494), ES-C57BL/6 (CVCL_5746) 27432957, 28802249 BI735450 Cand1 10 119216677 119216678 119220000 3322 Cand1 10 119213739 119213740 119210000 3739 Patski (CVCL_Y494), ES-C57BL/6 (CVCL_5746) 27432957, 28802249 BI735450 Cand1 10 119216677 119216678 119220000 3322 Cand1 10 119213739 119213740 119220000 6260 Patski (CVCL_Y494), ES-C57BL/6 (CVCL_5746) 27432957, 28802249
2 Mus musculus	CN833422 ANNOTATION OF CHIMERA FUSION GenBank ID: CN833422 FASTA Head Gene (1) Alignment: Cand1 Tail Gene (2) Alignment: Exoc2 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 71902 10 - 119202647 119206769 2 1 protein-coding 66482 13 - 30833871 30833898 0 0 protein-coding 714 mm10 Updated: 2019-06-11 Owner: ChiTaRS	Cand1 D3YWC5 Q3UMI9 Q6ZQ38 NM_027994.1	3..607 99.9%	- 10	Exoc2 Q8K2J3 Q9D4H1 XM_006516726.2	604..631 100.0%	- 13	1 0 0	exon-intron
3 Mus musculus	DV073443 ANNOTATION OF CHIMERA FUSION GenBank ID: DV073443 FASTA Head Gene (1) Alignment: Cand1 Tail Gene (2) Alignment: Gm36447 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 71902 10 - 119199256 119199811 1 1 protein-coding 102640374 5 - 150858247 150858280 0 0 1007 mm10 Updated: 2019-06-16 Owner: ChiTaRS	Cand1 D3YWC5 Q3UMI9 Q6ZQ38 NM_027994.1	20..575 99.9%	- 10	Gm36447 XR_377280.2	574..607 100.0%	- 5	1 0 0	exon-intron
4 Mus musculus	CO813748 ANNOTATION OF CHIMERA FUSION GenBank ID: CO813748 FASTA Head Gene (1) Alignment: Cand1 Tail Gene (2) Alignment: Tiam1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 71902 10 - 119202645 119208087 3 1 protein-coding 21844 16 - 90115741 90115765 0 0 protein-coding 766 mm10 Updated: 2019-06-11 Owner: ChiTaRS	Cand1 D3YWC5 Q3UMI9 Q6ZQ38 NM_027994.1	5..717 99.6%	- 10	Tiam1 E9Q1R7 G3UWG2 J3QMH1 J3QQ55 Q3TQ81 Q3TRA4 Q3UHH6 Q3UVX2 Q60610 Q6P1D6 XM_017316936.1	713..737 100.0%	- 16	1 0 0	exon-intron
5 Mus musculus	BQ840543 ANNOTATION OF CHIMERA FUSION GenBank ID: BQ840543 FASTA Head Gene (1) Alignment: Cand1 Tail Gene (2) Alignment: Efcab9 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 71902 10 + 119211958 119211985 1 1 protein-coding 69306 11 - 32523637 32527549 3 1 protein-coding 586 mm10 Updated: 2019-05-28 Owner: ChiTaRS	Cand1 D3YWC5 Q3UMI9 Q6ZQ38 NM_027994.1	179..206 100.0%	+ 10	Efcab9 B1ATW6 Q9DAM2 XM_011243747.2	207..586 100.0%	- 11	1 0 0	exon-exon

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