Result for the search of Gene Name/NCBI ID(s): 'CWC27'

Total of fusion sequences: 6 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	BI493115 ANNOTATION OF CHIMERA FUSION GenBank ID: BI493115 FASTA Head Gene (1) Alignment: A2M | OMIM: 103950 Tail Gene (2) Alignment: CWC27 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 2 12 - 9067712 9072398 6 1 protein-coding 10283 5 - 64970762 64970781 3 0 protein-coding 497 hg38 Updated: 2019-02-17 Owner: ChiTaRS	A2M F5H1E8 F8W7L3 H0YFH1 L0R6B6 P01023 Q9BQ22 NM_001347423.1	8..480 100.0%	- 12	CWC27 D6REK3 Q6UX04 NM_005869.3	469..488 100.0%	- 5	0 4666 0	exon-intron
2 Homo Sapiens	H89138 ANNOTATION OF CHIMERA FUSION GenBank ID: H89138 FASTA Head Gene (1) Alignment: A2M | OMIM: 103950 Tail Gene (2) Alignment: CWC27 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 2 12 - 9067712 9067732 1 0 protein-coding 10283 5 - 64970762 64970781 1 0 protein-coding 105 hg38 Updated: 2018-11-18 Owner: ChiTaRS	A2M F5H1E8 F8W7L3 H0YFH1 L0R6B6 P01023 Q9BQ22	1..21 100.0%	- 12	CWC27 D6REK3 Q6UX04	10..29 100.0%	- 5	0 4666 0	intron-intron
3 Homo Sapiens	FN115586 ANNOTATION OF CHIMERA FUSION GenBank ID: FN115586 FASTA Head Gene (1) Alignment: MEIOB Tail Gene (2) Alignment: CWC27 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 254528 16 - 1860602 1860622 0 0 protein-coding 10283 5 + 64804229 64804304 1 1 protein-coding 85 hg38 Updated: 2019-03-03 Owner: ChiTaRS	MEIOB H3BSU6 H3BU10 H3BU18 Q8N635 NM_001163560.2	2..22 100.0%	- 16	CWC27 D6REK3 Q6UX04 NM_005869.3	8..82 97.3%	+ 5	1 0 0	intron-exon
4 Homo Sapiens	AW023562 ANNOTATION OF CHIMERA FUSION GenBank ID: AW023562 FASTA Head Gene (1) Alignment: METAP1D | OMIM: 610267 Tail Gene (2) Alignment: CWC27 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 254042 2 + 172001566 172001588 1 0 protein-coding 10283 5 + 64971701 65018347 3 1 protein-coding 426 hg38 Updated: 2019-02-07 Owner: ChiTaRS	METAP1D Q6UB28 NM_001322278.1	9..30 100.0%	+ 2	CWC27 D6REK3 Q6UX04 NM_005869.3	22..426 99.8%	+ 5	1 0 0	intron-exon
5 Homo Sapiens	BG170618 ANNOTATION OF CHIMERA FUSION GenBank ID: BG170618 FASTA Head Gene (1) Alignment: CWC27 Tail Gene (2) Alignment: CWC27 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 10283 5 - 64769106 64769167 1 1 protein-coding 10283 5 + 64769146 64786580 14 1 protein-coding 980 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Pro_isomerase (PF00160, IPR002130) 159 39 128 6.3e-28 84.200 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DUF2346 (PF09803, IPR018625) 73 203 238 0.0042 3.900 Uncharacterized conserved protein (DUF2346) DUF4407 (PF14362, IPR025519) 298 307 460 0.0046 2.400 Domain of unknown function (DUF4407) Updated: 2019-02-20 Owner: ChiTaRS	CWC27 D6REK3 Q6UX04 NM_005869.3	44..105 100.0%	- 5	CWC27 D6REK3 Q6UX04 NM_005869.3	100..643 98.9%	+ 5	1 0 0	exon-exon
6 Homo Sapiens	EC551357 ANNOTATION OF CHIMERA FUSION GenBank ID: EC551357 FASTA Head Gene (1) Alignment: CWC27 Tail Gene (2) Alignment: LOC100130950 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 10283 5 - 64874187 64874539 0 0 protein-coding 100130950 17 - 5201447 5201477 0 0 ncRNA 85 hg38 Updated: 2019-03-25 Owner: ChiTaRS	CWC27 D6REK3 Q6UX04 NM_005869.3	1..73 95.9%	- 5	LOC100130950 NR_034082.2	58..85 98.7%	- 17	1 0 0	intron-intron

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