Result for the search of Gene Name/NCBI ID(s): 'CPD'

Total of fusion sequences: 10 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	SplGraphs AI825854 ANNOTATION OF CHIMERA FUSION GenBank ID: AI825854 FASTA Head Gene (1) Alignment: CPD | OMIM: 603102 Tail Gene (2) Alignment: UQCRQ | OMIM: 612080 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1362 17 + 30379231 30379556 1 1 protein-coding 27089 5 + 132866887 132866942 2 1 protein-coding 375 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Peptidase_M14 (PF00246, IPR000834, SM00631) 289 65 228 1.8e-35 109.200 Zinc carboxypeptidase UcrQ (PF02939, IPR004205) 78 192 267 7.4e-35 105.100 UcrQ family Updated: 2019-02-20 Owner: ChiTaRS	CPD J3QQJ4 J3QRJ9 K7ELF0 O75976 NM_001304.4	1..326 100.0%	+ 17	UQCRQ O14949 NM_014402.4	320..375 100.0%	+ 5	1 0 0	exon-exon
2 Homo Sapiens	ChimerDB AA234313 ANNOTATION OF CHIMERA FUSION GenBank ID: AA234313 FASTA Head Gene (1) Alignment: CPD | OMIM: 603102 Tail Gene (2) Alignment: GSTO1 | OMIM: 605482 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1362 17 + 30431829 30439063 9 1 protein-coding 9446 10 + 104259732 104266170 4 1 protein-coding 383 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Peptidase_M14 (PF00246, IPR000834, SM00631) 289 65 372 1.4e-80 257.300 Zinc carboxypeptidase CarboxypepD_reg (PF13620) 82 383 460 4.4e-18 51.700 Carboxypeptidase regulatory-like domain GST_C_3 (PF14497, IPR004046) 99 755 854 3.6e-13 35.900 Glutathione S-transferase, C-terminal domain Updated: 2019-02-20 Owner: ChiTaRS	CPD J3QQJ4 J3QRJ9 K7ELF0 O75976 NM_001304.4	1..140 99.3%	+ 17	GSTO1 P78417 Q5TA01 Q5TA02 V9HWG9 NM_001191003.1	131..383 100.0%	+ 10	1 0 0	exon-exon
3 Homo Sapiens	DR003197 ANNOTATION OF CHIMERA FUSION GenBank ID: DR003197 FASTA Head Gene (1) Alignment: CPD | OMIM: 603102 Tail Gene (2) Alignment: CPD | OMIM: 603102 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1362 17 - 30379120 30379572 1 1 protein-coding 1362 17 + 30378966 30379063 21 1 protein-coding 551 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Peptidase_M14 (PF00246, IPR000834, SM00631) 289 65 220 1.8e-34 106.000 Zinc carboxypeptidase CarboxypepD_reg (PF13620) 82 734 811 1e-17 50.500 Carboxypeptidase regulatory-like domain Updated: 2019-02-21 Owner: ChiTaRS	CPD J3QQJ4 J3QRJ9 K7ELF0 O75976 NM_001304.4	7..459 100.0%	- 17	CPD J3QQJ4 J3QRJ9 K7ELF0 O75976 NM_001304.4	454..551 100.0%	+ 17	1 0 0	exon-exon	1HiC Hi-C contacts of chimeric junction Fusion Gene1 chromo- some1 junction start1 junction end1 Hi-C point1 Δ1 Gene2 chromo- some2 junction start2 junction end2 Hi-C point2 Δ2 Cell lines (Cell_ID,) PubMed(,s) 2 3 19 - - 32 - 8 25 - - 33 - 34 - DR003197 CPD 17 30379567 30379572 30382982 3410 CPD 17 30378966 30378971 30382982 4011 IMR-90 (CVCL_0347) 25497547
4 Homo Sapiens	BE173641 ANNOTATION OF CHIMERA FUSION GenBank ID: BE173641 FASTA Head Gene (1) Alignment: RGMB | OMIM: 612687 Tail Gene (2) Alignment: CPD | OMIM: 603102 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 285704 5 - 98783600 98783871 4 0 protein-coding 1362 17 - 30469174 30469356 1 1 protein-coding 457 hg38 Updated: 2019-02-20 Owner: ChiTaRS	RGMB A0A024RAS1 J3KNF6 Q6NW40 XM_011543345.2	10..282 96.0%	- 5	CPD J3QQJ4 J3QRJ9 K7ELF0 O75976 NM_001304.4	275..457 99.5%	- 17	1 0 0	intron-exon
5 Homo Sapiens	BF378747 ANNOTATION OF CHIMERA FUSION GenBank ID: BF378747 FASTA Head Gene (1) Alignment: SYAP1 Tail Gene (2) Alignment: CPD | OMIM: 603102 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 94056 X + 16754812 16754873 5 0 protein-coding 1362 17 + 30444355 30444519 10 0 protein-coding 228 hg38 Updated: 2019-02-20 Owner: ChiTaRS	SYAP1 Q96A49 NM_032796.3	12..73 98.4%	+ X	CPD J3QQJ4 J3QRJ9 K7ELF0 O75976 NM_001304.4	64..228 99.4%	+ 17	1 0 0	intron-intron
6 Homo Sapiens	ES316326 ANNOTATION OF CHIMERA FUSION GenBank ID: ES316326 FASTA Head Gene (1) Alignment: LOC105369402 Tail Gene (2) Alignment: CPD | OMIM: 603102 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 105369402 11 + 78306723 78306743 0 0 ncRNA 1362 17 + 30456254 30461946 4 1 protein-coding 475 hg38 Updated: 2019-03-03 Owner: ChiTaRS	LOC105369402 XR_950343.3	94..114 100.0%	+ 11	CPD J3QQJ4 J3QRJ9 K7ELF0 O75976 NM_001199775.1	102..471 99.2%	+ 17	1 0 0	intron-exon
7 Homo Sapiens	BM149616 ANNOTATION OF CHIMERA FUSION GenBank ID: BM149616 FASTA Head Gene (1) Alignment: AC025946.1 Tail Gene (2) Alignment: CPD | OMIM: 603102 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 4294900244 10 - 8460958 8461241 0 0 1362 17 - 30466108 30466418 1 1 protein-coding 344 hg38 Updated: 2019-01-29 Owner: ChiTaRS	AC025946.1	1..34 100.0%	- 10	CPD J3QQJ4 J3QRJ9 K7ELF0 O75976 NM_001304.4	34..344 97.2%	- 17	1 0 0	intron-exon
8 Homo Sapiens	FN078856 ANNOTATION OF CHIMERA FUSION GenBank ID: FN078856 FASTA Head Gene (1) Alignment: AC006960.2 Tail Gene (2) Alignment: CPD | OMIM: 603102 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 4294900682 7 - 36483568 36483589 0 0 1362 17 + 30468107 30468199 1 1 protein-coding 99 hg38 Updated: 2019-02-07 Owner: ChiTaRS	AC006960.2	1..22 95.5%	- 7	CPD J3QQJ4 J3QRJ9 K7ELF0 O75976 NM_001304.4	7..96 98.9%	+ 17	1 0 0	intron-exon
9 Homo Sapiens	FN128148 ANNOTATION OF CHIMERA FUSION GenBank ID: FN128148 FASTA Head Gene (1) Alignment: UBE2E2-AS1 Tail Gene (2) Alignment: CPD | OMIM: 603102 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 100505877 3 + 23197176 23197198 1 0 ncRNA 1362 17 + 30465620 30465686 1 1 protein-coding 75 hg38 Updated: 2019-02-08 Owner: ChiTaRS	UBE2E2-AS1 NR_136177.1	1..23 95.7%	+ 3	CPD J3QQJ4 J3QRJ9 K7ELF0 O75976 NM_001304.4	8..75 95.4%	+ 17	1 0 0	intron-exon
10 Homo Sapiens	CF122729 ANNOTATION OF CHIMERA FUSION GenBank ID: CF122729 FASTA Head Gene (1) Alignment: RPS21 | OMIM: 180477 Tail Gene (2) Alignment: CPD | OMIM: 603102 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 6227 20 + 62387104 62388522 6 1 protein-coding 1362 17 - 30356007 30439437 9 0 protein-coding 472 hg38 Updated: 2019-04-13 Owner: ChiTaRS	RPS21 P63220 Q6FGH5 Q8WVC2 Q9BYK1 Q9BYK2 NM_001024.3	37..395 99.2%	+ 20	CPD J3QQJ4 J3QRJ9 K7ELF0 O75976 NM_001199775.1	386..466 97.3%	- 17	1 0 0	exon-intron

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