Result for the search: Gene Name/NCBI ID(s): 'COPS5'

Total of fusion sequences: 9 (from 1,393,046 parsed EST/mRNAs. Last update 2019-09-04)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	-	16	17
Homo Sapiens	SplGraphs BE176782 ANNOTATION OF CHIMERA FUSION GenBank ID: BE176782 FASTA Head Gene (1) Alignment: COPS5 | OMIM: 604850 Tail Gene (2) Alignment: HNRNPH3 | OMIM: 602324 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 10987 8 - 67058081 67059417 7 1 protein-coding 3189 10 + 68341993 68342159 1 1 protein-coding 526 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to JAB (PF01398, IPR000555, SM00232) 118 50 161 1.5e-33 101.600 JAB1/Mov34/MPN/PAD-1 ubiquitin protease Updated: 2019-02-20 Owner: ChiTaRS	COPS5 A0A024R7W9 E5RFS1 E5RG35 E5RHF2 E5RHH5 E5RK55 Q92905 NM_006837.2	16..354 99.5%	- 8	HNRNPH3 A0A024QZK8 A0A024QZP1 P31942 NM_001322437.1	344..510 97.7%	+ 10	1 0 0	exon-exon
Homo Sapiens	BE176803 ANNOTATION OF CHIMERA FUSION GenBank ID: BE176803 FASTA Head Gene (1) Alignment: COPS5 | OMIM: 604850 Tail Gene (2) Alignment: HNRNPH3 | OMIM: 602324 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 10987 8 - 67058081 67059417 7 1 protein-coding 3189 10 + 68341993 68342159 1 1 protein-coding 504 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to JAB (PF01398, IPR000555, SM00232) 118 47 164 1.9e-32 98.000 JAB1/Mov34/MPN/PAD-1 ubiquitin protease Updated: 2019-02-20 Owner: ChiTaRS	COPS5 A0A024R7W9 E5RFS1 E5RG35 E5RHF2 E5RHH5 E5RK55 Q92905 NM_006837.2	7..345 99.2%	- 8	HNRNPH3 A0A024QZK8 A0A024QZP1 P31942 NM_001322437.1	335..501 98.9%	+ 10	1 0 0	exon-exon
Homo Sapiens	BE176861 ANNOTATION OF CHIMERA FUSION GenBank ID: BE176861 FASTA Head Gene (1) Alignment: COPS5 | OMIM: 604850 Tail Gene (2) Alignment: HNRNPH3 | OMIM: 602324 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 10987 8 - 67058081 67059417 7 1 protein-coding 3189 10 + 68341993 68342159 1 1 protein-coding 526 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to JAB (PF01398, IPR000555, SM00232) 118 61 163 1.5e-31 95.100 JAB1/Mov34/MPN/PAD-1 ubiquitin protease Updated: 2019-02-20 Owner: ChiTaRS	COPS5 A0A024R7W9 E5RFS1 E5RG35 E5RHF2 E5RHH5 E5RK55 Q92905 NM_006837.2	26..362 98.6%	- 8	HNRNPH3 A0A024QZK8 A0A024QZP1 P31942 NM_001322437.1	352..518 98.9%	+ 10	1 0 0	exon-exon
Mus musculus	BF453831 ANNOTATION OF CHIMERA FUSION GenBank ID: BF453831 FASTA Head Gene (1) Alignment: Cops5 Tail Gene (2) Alignment: Oca2 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 26754 1 - 10037263 10037641 0 0 18431 7 - 56448676 56448717 0 0 protein-coding 412 mm10 Updated: 2019-06-14 Owner: ChiTaRS	Cops5 A0A087WQ60 A0A087WQA8 A0A087WRH6 O35864 Q3V0K7 NM_013715.2	29..407 97.9%	- 1	Oca2 A0A0U1RP45 D3Z251 D6RCY7 D6RIQ8 Q62052 NM_021879.2	378..412 97.1%	- 7	1 0 0	intron-intron
Homo Sapiens	EC563021 ANNOTATION OF CHIMERA FUSION GenBank ID: EC563021 FASTA Head Gene (1) Alignment: COPS5 | OMIM: 604850 Tail Gene (2) Alignment: TRPM4 | OMIM: 606936 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 10987 8 - 67051346 67051383 0 0 protein-coding 54795 19 - 49211724 49211823 1 1 protein-coding 119 hg38 Updated: 2019-03-25 Owner: ChiTaRS	COPS5 A0A024R7W9 E5RFS1 E5RG35 E5RHF2 E5RHH5 E5RK55 Q92905 NM_006837.2	2..35 96.9%	- 8	TRPM4 A0A087X0Z3 M0QX92 M0QYK7 M0QZ19 M0R0H1 M0R3H6 Q8TD43 NM_017636.3	26..119 98.9%	- 19	1 0 0	intron-exon
Mus musculus	BG917259 ANNOTATION OF CHIMERA FUSION GenBank ID: BG917259 FASTA Head Gene (1) Alignment: Cops5 Tail Gene (2) Alignment: Pcyox1l Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 26754 1 - 10024830 10027161 2 1 240334 18 + 61696799 61696821 1 1 313 mm10 Updated: 2019-06-05 Owner: ChiTaRS	Cops5 A0A087WQ60 A0A087WQA8 A0A087WRH6 O35864 Q3V0K7 NM_013715.2	1..293 100.0%	- 1	Pcyox1l A0A0A6YY26 Q8C7K6 XM_006525936.3	288..310 100.0%	+ 18	1 0 0	exon-exon
Homo Sapiens	CA419886 ANNOTATION OF CHIMERA FUSION GenBank ID: CA419886 FASTA Head Gene (1) Alignment: COPS5 | OMIM: 604850 Tail Gene (2) Alignment: COPS5 | OMIM: 604850 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 10987 8 + 67043079 67045833 2 1 protein-coding 10987 8 - 67045866 67051297 7 1 protein-coding 436 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to JAB (PF01398, IPR000555, SM00232) 118 50 164 1.1e-37 114.900 JAB1/Mov34/MPN/PAD-1 ubiquitin protease Updated: 2019-02-22 Owner: ChiTaRS	COPS5 A0A024R7W9 E5RFS1 E5RG35 E5RHF2 E5RHH5 E5RK55 Q92905 NM_006837.2	16..277 99.7%	+ 8	COPS5 A0A024R7W9 E5RFS1 E5RG35 E5RHF2 E5RHH5 E5RK55 Q92905 NM_006837.2	274..436 96.4%	- 8	1 0 0	exon-exon
Mus musculus	BQ266810 ANNOTATION OF CHIMERA FUSION GenBank ID: BQ266810 FASTA Head Gene (1) Alignment: Cops5 Tail Gene (2) Alignment: Cops5 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 26754 1 + 10030899 10030919 0 0 26754 1 + 10024830 10030710 3 1 522 mm10 Updated: 2019-06-12 Owner: ChiTaRS	Cops5 A0A087WQ60 A0A087WQA8 A0A087WRH6 O35864 Q3V0K7 NM_013715.2	1..21 100.0%	+ 1	Cops5 A0A087WQ60 A0A087WQA8 A0A087WRH6 O35864 Q3V0K7 NM_013715.2	22..516 100.0%	+ 1	1 0 0	intron-exon
Mus musculus	DV071051 ANNOTATION OF CHIMERA FUSION GenBank ID: DV071051 FASTA Head Gene (1) Alignment: Cops5 Tail Gene (2) Alignment: Micu1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 26754 1 - 10024830 10030671 3 1 216001 10 + 59862131 59862160 0 0 962 mm10 Updated: 2019-06-16 Owner: ChiTaRS	Cops5 A0A087WQ60 A0A087WQA8 A0A087WRH6 O35864 Q3V0K7 NM_013715.2	19..473 99.8%	- 1	Micu1 E9Q9E0 F6Z1Z9 Q8VCX5 NM_001291442.1	474..503 100.0%	+ 10	1 0 0	exon-intron

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