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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'COL6A3'

Total of fusion sequences: 22 (from 1493742 parsed EST/mRNAs. Last update 2019-12-05 16:32:10)

Organism Fusion:
Graphical View,
Annotation,
PPI network
Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y)
Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences
Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript
Start1..End1
Ident1%
Strand1
Chrom1
Name(s)2,
transcript
Start2..End2
Ident2%
Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Homo Sapiens
SplGraphs
XM_011510574.1
1..335
100.0%
-
2

XM_005274322.3
332..561
100.0%
-
11
1
0
0
exon-exon
2
Homo Sapiens
ChimerDB
NM_001145725.1
10..480
99.8%
+
4

XM_017003304.1
475..680
98.6%
+
2
1
0
0
exon-exon
3
Homo Sapiens
ChimerDB
NM_052854.3
2..364
99.5%
-
11

XM_017003304.1
360..646
100.0%
+
2
1
0
0
exon-exon
4
Homo Sapiens
ChimerDB
XM_005266890.4
4..280
100.0%
+
6

XM_017003304.1
274..366
99.0%
+
2
1
0
0
exon-exon
5
Homo Sapiens
ChimerDB
XM_017003304.1
18..100
100.0%
+
2

NM_001008530.2
97..368
98.6%
+
14
1
0
0
exon-exon
6
Homo Sapiens
SplGraphs
XM_017003304.1
3..129
97.6%
-
2

NM_198236.2
123..210
96.6%
-
1
1
0
0
exon-exon
7
Homo Sapiens
22..318
99.0%
-
7
301..320
100.0%
+
2
1
0
0
intron-intron
8
Homo Sapiens
22..318
99.0%
-
7
301..320
100.0%
+
2
1
0
0
intron-intron
9
Homo Sapiens
22..318
99.0%
-
7
301..320
100.0%
+
2
1
0
0
intron-intron
10
Homo Sapiens

XM_017003304.1
22..268
99.6%
+
2

NM_006475.2
260..632
99.8%
-
13
1
0
0
exon-exon

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