Result for the search: Gene Name/NCBI ID(s): 'COL6A3'

Total of fusion sequences: 22 (from 1,389,894 parsed EST/mRNAs. Last update 2019-07-07)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	-	16	17
Homo Sapiens	SplGraphs DA556762 ANNOTATION OF CHIMERA FUSION GenBank ID: DA556762 FASTA Head Gene (1) Alignment: COL6A3 | OMIM: 120250 Tail Gene (2) Alignment: PICALM | OMIM: 603025 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1293 2 - 237396726 237414165 44 1 protein-coding 8301 11 - 85981885 85983976 15 1 oncogene 561 hg38 Updated: 2019-02-21 Owner: ChiTaRS	COL6A3 B7ZW00 C9JNG9 D9ZGF2 E7ENL6 I3L392 P12111 XM_011510574.1	1..335 100.0%	- 2	PICALM A0A024R5L7 A0A024R5P1 B5BU72 E9PI56 E9PJT1 E9PK13 E9PKP6 E9PLJ8 H0YCY1 H0YD48 H0YE97 H0YEF7 H0YEH1 H0YEY8 L8ECD8 Q13492 XM_005274322.3	332..561 100.0%	- 11	1 0 0	exon-exon
Homo Sapiens	ChimerDB BU616556 ANNOTATION OF CHIMERA FUSION GenBank ID: BU616556 FASTA Head Gene (1) Alignment: LYAR Tail Gene (2) Alignment: COL6A3 | OMIM: 120250 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 55646 4 + 4274604 4281895 7 1 protein-coding 1293 2 + 237366727 237366931 13 1 protein-coding 680 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to zf-LYAR (PF08790, IPR014898) 28 31 58 3.6e-19 54.800 LYAR-type C2HC zinc finger GAGA_bind (PF06217, IPR010409) 295 65 228 0.00083 5.800 GAGA binding protein-like family VWA (PF00092, IPR002035, SM00327) 175 443 507 3e-09 23.500 von Willebrand factor type A domain Collagen (PF01391, IPR008160) 60 732 792 1.9e-12 33.100 Collagen triple helix repeat (20 copies) DUF1860 (PF08949, IPR015044) 219 1044 1078 9.1e-05 8.400 Domain of unknown function (DUF1860) MIP-T3 (PF10243) 541 1538 1624 0.0068 1.100 Microtubule-binding protein MIP-T3 ASFV_J13L (PF05568, IPR008385) 189 1638 1737 0.0058 2.500 African swine fever virus J13L protein Kunitz_BPTI (PF00014, IPR002223, SM00131) 53 1807 1859 9.4e-24 69.800 Kunitz/Bovine pancreatic trypsin inhibitor domain Updated: 2019-02-21 Owner: ChiTaRS	LYAR D6RDJ1 Q9NX58 NM_001145725.1	10..480 99.8%	+ 4	COL6A3 B7ZW00 C9JNG9 D9ZGF2 E7ENL6 I3L392 P12111 XM_017003304.1	475..680 98.6%	+ 2	1 0 0	exon-exon	2HiC Hi-C contacts of chimeric junction Fusion Gene1 chromosome1 junction start1 junction end1 Hi-C point1 Δ1 Gene2 chromosome2 junction start2 junction end2 Hi-C point2 Δ2 Cell lines (Cellosaurus ID) 2 3 19 - - 32 - 8 25 - - 33 - 34 BU616556 LYAR 4 4281890 4281895 4278273 3617 COL6A3 2 237366727 237366732 237361357 5370 GM12878 (CVCL_7526) BU616556 LYAR 4 4281890 4281895 4278273 3617 COL6A3 2 237366727 237366732 237371357 4625 GM12878 (CVCL_7526)
Homo Sapiens	ChimerDB CA447052 ANNOTATION OF CHIMERA FUSION GenBank ID: CA447052 FASTA Head Gene (1) Alignment: CREB3L1 | OMIM: 616215 Tail Gene (2) Alignment: COL6A3 | OMIM: 120250 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 90993 11 - 46321047 46321409 12 1 oncogene, tumor suppressor 1293 2 + 237353343 237359041 27 1 protein-coding 646 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Collagen (PF01391, IPR008160) 60 1099 1196 0.0004 6.400 Collagen triple helix repeat (20 copies) VWA (PF00092, IPR002035, SM00327) 175 1370 1548 9.3e-23 67.500 von Willebrand factor type A domain MGC-24 (PF05283, IPR007947) 140 1789 1891 0.0017 5.000 Multi-glycosylated core protein 24 (MGC-24), sialomucin MIP-T3 (PF10243) 541 1810 1899 0.007 1.100 Microtubule-binding protein MIP-T3 ASFV_J13L (PF05568, IPR008385) 189 1910 2009 0.0067 2.300 African swine fever virus J13L protein Kunitz_BPTI (PF00014, IPR002223, SM00131) 53 2079 2131 1.1e-23 69.600 Kunitz/Bovine pancreatic trypsin inhibitor domain Updated: 2019-02-21 Owner: ChiTaRS	CREB3L1 E9PK33 H0YEU7 Q96BA8 NM_052854.3	2..364 99.5%	- 11	COL6A3 B7ZW00 C9JNG9 D9ZGF2 E7ENL6 I3L392 P12111 XM_017003304.1	360..646 100.0%	+ 2	1 0 0	exon-exon
Homo Sapiens	ChimerDB AI952526 ANNOTATION OF CHIMERA FUSION GenBank ID: AI952526 FASTA Head Gene (1) Alignment: FYN | OMIM: 137025 Tail Gene (2) Alignment: COL6A3 | OMIM: 120250 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 2534 6 + 111661286 111661562 1 1 oncogene 1293 2 + 237368882 237368975 12 1 protein-coding 373 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to VWA (PF00092, IPR002035, SM00327) 175 982 1124 3e-22 65.900 von Willebrand factor type A domain Collagen (PF01391, IPR008160) 60 1552 1613 1.3e-12 33.600 Collagen triple helix repeat (20 copies) DUF1860 (PF08949, IPR015044) 219 1864 1898 0.00013 7.900 Domain of unknown function (DUF1860) MGC-24 (PF05283, IPR007947) 140 2337 2439 0.0025 4.500 Multi-glycosylated core protein 24 (MGC-24), sialomucin MIP-T3 (PF10243) 541 2358 2453 0.015 0.000 Microtubule-binding protein MIP-T3 ASFV_J13L (PF05568, IPR008385) 189 2456 2557 0.011 1.600 African swine fever virus J13L protein Kunitz_BPTI (PF00014, IPR002223, SM00131) 53 2627 2679 1.4e-23 69.200 Kunitz/Bovine pancreatic trypsin inhibitor domain Updated: 2019-02-20 Owner: ChiTaRS	FYN E5RFM0 E5RFM4 E5RFM6 E5RFS5 E5RGM6 E5RGT0 E5RH71 E5RHF7 E5RHX7 E5RI25 E5RIX5 E5RJX7 E5RK23 P06241 P78484 Q14342 XM_005266890.4	4..280 100.0%	+ 6	COL6A3 B7ZW00 C9JNG9 D9ZGF2 E7ENL6 I3L392 P12111 XM_017003304.1	274..366 99.0%	+ 2	1 0 0	exon-exon
Homo Sapiens	ChimerDB AW450755 ANNOTATION OF CHIMERA FUSION GenBank ID: AW450755 FASTA Head Gene (1) Alignment: COL6A3 | OMIM: 120250 Tail Gene (2) Alignment: LGMN | OMIM: 602620 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1293 2 + 237324017 237324099 1 1 protein-coding 5641 14 + 92711891 92714451 10 1 protein-coding 389 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to VWA (PF00092, IPR002035, SM00327) 175 190 363 4.9e-52 162.900 von Willebrand factor type A domain Collagen (PF01391, IPR008160) 60 2187 2247 3.4e-12 32.300 Collagen triple helix repeat (20 copies) MGC-24 (PF05283, IPR007947) 140 2972 3080 0.00085 6.000 Multi-glycosylated core protein 24 (MGC-24), sialomucin Kunitz_BPTI (PF00014, IPR002223, SM00131) 53 3262 3314 2.2e-23 68.600 Kunitz/Bovine pancreatic trypsin inhibitor domain Peptidase_C13 (PF01650, IPR001096) 256 3697 3849 9.3e-65 204.700 Peptidase C13 family Updated: 2019-02-20 Owner: ChiTaRS	COL6A3 B7ZW00 C9JNG9 D9ZGF2 E7ENL6 I3L392 P12111 XM_017003304.1	18..100 100.0%	+ 2	LGMN G3V263 G3V2E9 G3V2T4 G3V3Z4 G3V4E4 G3V4P5 G3V5B2 H0YJN9 Q53XC6 Q6I9U9 Q99538 NM_001008530.2	97..368 98.6%	+ 14	1 0 0	exon-exon
Homo Sapiens	SplGraphs BE693421 ANNOTATION OF CHIMERA FUSION GenBank ID: BE693421 FASTA Head Gene (1) Alignment: COL6A3 | OMIM: 120250 Tail Gene (2) Alignment: ARHGEF11 | OMIM: 605708 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1293 2 - 237359034 237359386 27 1 protein-coding 9826 1 - 157045302 157045389 1 1 protein-coding 211 hg38 Updated: 2019-02-17 Owner: ChiTaRS	COL6A3 B7ZW00 C9JNG9 D9ZGF2 E7ENL6 I3L392 P12111 XM_017003304.1	3..129 97.6%	- 2	ARHGEF11 A0A2X0SFB0 O15085 NM_198236.2	123..210 96.6%	- 1	1 0 0	exon-exon
Homo Sapiens	BM997144 ANNOTATION OF CHIMERA FUSION GenBank ID: BM997144 FASTA Head Gene (1) Alignment: TRNS1 Tail Gene (2) Alignment: COL6A3 | OMIM: 120250 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 4574 MT - 7188 7512 0 0 tRNA 1293 2 + 237340934 237344391 40 1 protein-coding 694 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to VWA (PF00092, IPR002035, SM00327) 175 817 1006 1.8e-33 102.400 von Willebrand factor type A domain MGC-24 (PF05283, IPR007947) 140 1019 1120 0.001 5.700 Multi-glycosylated core protein 24 (MGC-24), sialomucin MIP-T3 (PF10243) 541 1040 1129 0.0049 1.600 Microtubule-binding protein MIP-T3 Kunitz_BPTI (PF00014, IPR002223, SM00131) 53 1309 1361 6.6e-24 70.300 Kunitz/Bovine pancreatic trypsin inhibitor domain Updated: 2019-02-17 Owner: ChiTaRS	TRNS1	20..343 100.0%	- MT	COL6A3 B7ZW00 C9JNG9 D9ZGF2 E7ENL6 I3L392 P12111 XM_017003304.1	339..694 99.5%	+ 2	1 0 0	intron-exon
Homo Sapiens	BQ330916 ANNOTATION OF CHIMERA FUSION GenBank ID: BQ330916 FASTA Head Gene (1) Alignment: COL6A3 | OMIM: 120250 Tail Gene (2) Alignment: STK39 | OMIM: 607648 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1293 2 + 237353341 237357372 22 1 protein-coding 27347 2 + 168212475 168212623 1 0 protein-coding 296 hg38 Updated: 2019-02-21 Owner: ChiTaRS	COL6A3 B7ZW00 C9JNG9 D9ZGF2 E7ENL6 I3L392 P12111 XM_017003304.1	20..152 100.0%	+ 2	STK39 Q9UEW8 X5D2U3 X5D2Y0 X5D7P8 X5D9L8 X5DP03 XM_017003813.2	148..296 99.4%	+ 2	1 0 0	exon-intron
Homo Sapiens	BE840726 ANNOTATION OF CHIMERA FUSION GenBank ID: BE840726 FASTA Head Gene (1) Alignment: PARD3 | OMIM: 606745 Tail Gene (2) Alignment: COL6A3 | OMIM: 120250 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 56288 10 - 34607549 34607694 23 0 protein-coding 1293 2 + 237324484 237324616 46 1 protein-coding 317 hg38 Updated: 2019-02-20 Owner: ChiTaRS	PARD3 B1AP52 F5GZI3 Q5VWU8 Q5VWV2 Q8TEW0 NM_001184785.1	33..178 100.0%	- 10	COL6A3 B7ZW00 C9JNG9 D9ZGF2 E7ENL6 I3L392 P12111 XM_017003304.1	171..303 100.0%	+ 2	1 0 0	intron-exon
Homo Sapiens	DI071473 ANNOTATION OF CHIMERA FUSION GenBank ID: DI071473 FASTA Head Gene (1) Alignment: COL1A2 | OMIM: 120160 Tail Gene (2) Alignment: COL6A3 | OMIM: 120250 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1278 7 - 94404856 94408234 7 0 oncogene 1293 2 + 237352559 237352578 1 0 protein-coding 349 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Collagen (PF01391, IPR008160) 60 29 82 1.1e-11 30.700 Collagen triple helix repeat (20 copies) DUF1860 (PF08949, IPR015044) 219 686 716 0.018 0.900 Domain of unknown function (DUF1860) VWA (PF00092, IPR002035, SM00327) 175 1260 1438 8.7e-23 67.600 von Willebrand factor type A domain MGC-24 (PF05283, IPR007947) 140 1679 1780 0.0015 5.200 Multi-glycosylated core protein 24 (MGC-24), sialomucin MIP-T3 (PF10243) 541 1700 1789 0.0074 1.000 Microtubule-binding protein MIP-T3 ASFV_J13L (PF05568, IPR008385) 189 1799 1899 0.0079 2.100 African swine fever virus J13L protein Kunitz_BPTI (PF00014, IPR002223, SM00131) 53 1969 2021 1e-23 69.700 Kunitz/Bovine pancreatic trypsin inhibitor domain Updated: 2016-11-30 Owner: ChiTaRS	COL1A2 A0A087WTA8 A0A0S2Z3H5 A0A0S2Z3K0 A0A384MDU2 A2TIK1 P08123 Q14036 Q16033 Q16452 Q75N18 Q7KZ71	22..318 99.0%	- 7	COL6A3 B7ZW00 C9JNG9 D9ZGF2 E7ENL6 I3L392 P12111	301..320 100.0%	+ 2	1 0 0	intron-intron

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