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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'COL6A1'

Total of fusion sequences: 23 (from 3,568,812 parsed EST/mRNAs. Last update 2020-07-14 10:36:55)

Organism Fusion:
Graphical View,
Annotation,
PPI network
Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y)
Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences
Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript
Start1..End1
Ident1%
Strand1
Chrom1
Name(s)2,
transcript
Start2..End2
Ident2%
Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Homo Sapiens
ChimerDB
NM_001848.2
19..317
98.4%
-
21

NM_001199142.1
315..621
99.1%
-
16
1
0
0
exon-exon
2
Homo Sapiens
ChimerDB
NM_001554.4
17..555
99.9%
-
1

NM_001848.2
553..644
100.0%
-
21
1
0
0
exon-exon
3
Homo Sapiens
SplGraphs
NM_001848.2
11..278
99.7%
+
21

XM_005271113.5
274..351
100.0%
-
1
1
0
0
exon-exon
4
Homo Sapiens

NM_001848.2
13..108
98.0%
+
21

NM_001848.2
100..188
100.0%
-
21
0
2973
2271
exon-exon
5
Homo Sapiens

NM_001848.2
16..154
98.6%
-
21

NM_001848.2
144..388
95.1%
+
21
2
579
294
exon-exon
6
Homo Sapiens

NM_001848.2
15..128
100.0%
-
21

NM_001848.2
127..162
100.0%
+
21
2
579
294
exon-exon
7
Homo Sapiens

NM_001848.2
19..204
98.4%
+
21

XM_005259660.3
199..343
98.7%
+
19
7
40
0
intron-intron
8
Homo Sapiens

XM_011528360.1
9..210
98.5%
-
19

NM_001848.2
205..361
99.4%
-
21
7
9
13
exon-intron
9
Homo Sapiens

XM_011528360.1
8..192
100.0%
-
19

NM_001848.2
187..372
99.5%
-
21
7
7
0
exon-intron
10
Homo Sapiens

XM_011528360.1
1..192
100.0%
-
19

NM_001848.2
187..372
98.4%
-
21
7
0
0
exon-intron

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