Result for the search of Gene Name/NCBI ID(s): 'CLN8'

Total of fusion sequences: 6 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	SplGraphs AA368223 ANNOTATION OF CHIMERA FUSION GenBank ID: AA368223 FASTA Head Gene (1) Alignment: TMEM59 Tail Gene (2) Alignment: CLN8 | OMIM: 607837 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 9528 1 - 54053166 54053238 8 1 protein-coding 2055 8 + 1782776 1783044 1 1 protein-coding 367 hg38 Updated: 2019-02-20 Owner: ChiTaRS	TMEM59 D3DQ48 Q5T6Z8 Q5T703 Q5T704 Q5T706 Q6P5R1 Q9BXS4 NM_001305043.1	27..99 95.9%	- 1	CLN8 A0A024QZ57 A0A0J9YWD2 A0A0J9YX19 A0A0J9YXY6 A0A0J9YYK8 A0A1B0GU79 A0A1B0GUR8 B9EGV9 Q9UBY8 NM_018941.3	99..367 99.7%	+ 8	2 59 0	exon-exon
2 Homo Sapiens	SplGraphs CX755976 ANNOTATION OF CHIMERA FUSION GenBank ID: CX755976 FASTA Head Gene (1) Alignment: CLN8 | OMIM: 607837 Tail Gene (2) Alignment: NMT1 | OMIM: 160993 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 2055 8 + 1781006 1781086 3 1 protein-coding 4836 17 + 45105809 45106461 1 1 oncogene, protein-coding 726 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to TRAM_LAG1_CLN8 (PF03798, IPR006634) 198 165 353 4.9e-13 35.400 TLC domain Updated: 2019-02-21 Owner: ChiTaRS	CLN8 A0A024QZ57 A0A0J9YWD2 A0A0J9YX19 A0A0J9YXY6 A0A0J9YYK8 A0A1B0GU79 A0A1B0GUR8 B9EGV9 Q9UBY8 NM_018941.3	1..81 96.3%	+ 8	NMT1 A4FU65 B7Z8J4 K7EN42 K7EN82 P30419 Q96HI4 Q9Y465 NM_021079.4	74..722 99.3%	+ 17	1 0 0	exon-exon
3 Homo Sapiens	ChimerDB AA368225 ANNOTATION OF CHIMERA FUSION GenBank ID: AA368225 FASTA Head Gene (1) Alignment: TMEM59 Tail Gene (2) Alignment: CLN8 | OMIM: 607837 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 9528 1 - 54053166 54053238 8 1 protein-coding 2055 8 + 1782776 1782985 1 1 protein-coding 308 hg38 Updated: 2019-02-20 Owner: ChiTaRS	TMEM59 D3DQ48 Q5T6Z8 Q5T703 Q5T704 Q5T706 Q6P5R1 Q9BXS4 NM_001305043.1	27..99 98.7%	- 1	CLN8 A0A024QZ57 A0A0J9YWD2 A0A0J9YX19 A0A0J9YXY6 A0A0J9YYK8 A0A1B0GU79 A0A1B0GUR8 B9EGV9 Q9UBY8 NM_018941.3	99..308 99.6%	+ 8	2 59 0	exon-exon
4 Homo Sapiens	EC444238 ANNOTATION OF CHIMERA FUSION GenBank ID: EC444238 FASTA Head Gene (1) Alignment: TTLL9 Tail Gene (2) Alignment: CLN8 | OMIM: 607837 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 164395 20 + 31931899 31931911 0 0 protein-coding 2055 8 - 1761459 1761557 0 0 protein-coding 112 hg38 Updated: 2019-04-14 Owner: ChiTaRS	TTLL9 A0A087WWB8 A0A087WXF5 A0A087WYL2 A0A087X135 A0A0A0MR21 A0A2R8Y6A5 A0A2R8YD21 B4DZ96 Q3SXZ7 XM_011528634.1	1..13 96.5%	+ 20	CLN8 A0A024QZ57 A0A0J9YWD2 A0A0J9YX19 A0A0J9YXY6 A0A0J9YYK8 A0A1B0GU79 A0A1B0GUR8 B9EGV9 Q9UBY8 XM_005266022.1	14..112 100.0%	- 8	1 0 0	intron-intron
5 Homo Sapiens	BF437094 ANNOTATION OF CHIMERA FUSION GenBank ID: BF437094 FASTA Head Gene (1) Alignment: CLN8 | OMIM: 607837 Tail Gene (2) Alignment: TNRC6A | OMIM: 610739 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 2055 8 + 1762638 1762930 0 0 protein-coding 27327 16 - 24790710 24790920 1 1 protein-coding 503 hg38 Updated: 2019-04-13 Owner: ChiTaRS	CLN8 A0A024QZ57 A0A0J9YWD2 A0A0J9YX19 A0A0J9YXY6 A0A0J9YYK8 A0A1B0GU79 A0A1B0GUR8 B9EGV9 Q9UBY8 XM_005266022.1	3..295 100.0%	+ 8	TNRC6A H3BRT3 H3BTQ1 H7C269 I3L218 I3L3S5 Q8NDV7 XM_017023145.2	293..503 100.0%	- 16	1 0 0	intron-exon
6 Homo Sapiens	AA531433 ANNOTATION OF CHIMERA FUSION GenBank ID: AA531433 FASTA Head Gene (1) Alignment: SLC13A5 | OMIM: 608305 Tail Gene (2) Alignment: CLN8 | OMIM: 607837 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 284111 17 + 6699308 6699523 0 0 protein-coding 2055 8 - 1780997 1781379 1 1 protein-coding 392 hg38 Updated: 2019-04-13 Owner: ChiTaRS	SLC13A5 I3L2Y7 I3L424 I3L4S9 I3L4X6 Q86YT5 NM_001284509.1	1..59 95.5%	+ 17	CLN8 A0A024QZ57 A0A0J9YWD2 A0A0J9YX19 A0A0J9YXY6 A0A0J9YYK8 A0A1B0GU79 A0A1B0GUR8 B9EGV9 Q9UBY8 NM_018941.3	11..392 99.5%	- 8	1 0 0	intron-exon

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