Result for the search of Gene Name/NCBI ID(s): 'CLDN1'

Total of fusion sequences: 5 (from 10,657,267 parsed EST/mRNAs. Last update: 2020-11-05 10:39:19)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Mus musculus	BE553184 ANNOTATION OF CHIMERA FUSION GenBank ID: BE553184 FASTA Head Gene (1) Alignment: Cldn1 Tail Gene (2) Alignment: Kifc1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 12737 16 - 26356645 26356934 1 1 100502766 17 - 33876184 33876220 0 0 330 mm10 Updated: 2019-06-15 Owner: ChiTaRS	Cldn1 A7UKX1 O88551 Q4FJV3 NM_016674.4	24..313 100.0%	- 16	Kifc1 A0A068BFR6 G3UX22 G3UXN2 Q5BJ94 Q810Z7 Q9QWT9 NM_001195298.1	303..330 96.3%	- 17	1 0 0	exon-intron
2 Mus musculus	CD766630 ANNOTATION OF CHIMERA FUSION GenBank ID: CD766630 FASTA Head Gene (1) Alignment: Cldn1 Tail Gene (2) Alignment: Krt20 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 12737 16 - 26356645 26356849 1 1 66809 11 + 99433601 99433625 0 0 608 mm10 Updated: 2019-06-12 Owner: ChiTaRS	Cldn1 A7UKX1 O88551 Q4FJV3 NM_016674.4	4..208 100.0%	- 16	Krt20 Q9D312 NM_023256.2	205..229 96.0%	+ 11	1 0 0	exon-intron
3 Mus musculus	BE554588 ANNOTATION OF CHIMERA FUSION GenBank ID: BE554588 FASTA Head Gene (1) Alignment: Gm17057 Tail Gene (2) Alignment: Cldn1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 102638508 15 + 99818239 99818258 1 1 12737 16 + 26356645 26357098 1 1 473 mm10 Updated: 2019-06-15 Owner: ChiTaRS	Gm17057 XR_384452.2	8..27 100.0%	+ 15	Cldn1 A7UKX1 O88551 Q4FJV3 NM_016674.4	20..473 99.8%	+ 16	1 0 0	exon-exon
4 Mus musculus	BQ033612 ANNOTATION OF CHIMERA FUSION GenBank ID: BQ033612 FASTA Head Gene (1) Alignment: Ppp2r2a Tail Gene (2) Alignment: Cldn1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 71978 14 - 67051799 67051821 0 0 protein-coding 12737 16 + 26356649 26357251 1 1 370 mm10 Updated: 2019-06-12 Owner: ChiTaRS	Ppp2r2a A0A286YDJ9 Q3TPC5 Q3TT94 Q571J7 Q6P1F6 Q7TPQ7 Q9CWU3 XM_011245205.2	8..30 100.0%	- 14	Cldn1 A7UKX1 O88551 Q4FJV3 NM_016674.4	17..370 100.0%	+ 16	1 0 0	intron-exon
5 Mus musculus	BE553766 ANNOTATION OF CHIMERA FUSION GenBank ID: BE553766 FASTA Head Gene (1) Alignment: Dlg2 Tail Gene (2) Alignment: Cldn1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 23859 7 - 91039484 91039534 0 0 protein-coding 12737 16 + 26356649 26357025 1 1 399 mm10 Updated: 2019-06-15 Owner: ChiTaRS	Dlg2 A0A240F9Y3 A0A240F9Y4 A0A2L2P590 A0A2L2P595 A0A338P6J0 D3YUZ8 D3YWU0 E9Q2L2 O88523 Q91XM9 XM_006507769.3	6..43 100.0%	- 7	Cldn1 A7UKX1 O88551 Q4FJV3 NM_016674.4	23..399 99.8%	+ 16	1 0 0	intron-exon

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