Result for the search of Gene Name/NCBI ID(s): 'CHI3L1'

Total of fusion sequences: 13 (from 6,491,097 parsed EST/mRNAs. Last update: 2020-08-30 12:24:27)

Organism	Fusion: Graphical View, Annotation, PPI network	Head Gene (1)			Tail Gene (2)			Rank, Deviation: Eloc(x) Sloc(y)	Fusion type RNA	Hi-C, RNAseq, Mass-spec evidences	Cancer Breakpoint, PubMed(s)
		Name(s)1, transcript	Start1..End1 Ident1%	Strand1 Chrom1	Name(s)2, transcript	Start2..End2 Ident2%	Strand2 Chrom2
1	2	3	4,5,6	7,19	8	9,10,11	12,25	13,14,15	32	16	17
1 Homo Sapiens	AA166773 ANNOTATION OF CHIMERA FUSION GenBank ID: AA166773 FASTA Head Gene (1) Alignment: CHI3L1 | OMIM: 601525 Tail Gene (2) Alignment: TAX1BP1 | OMIM: 605326 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1116 1 - 203178931 203179231 1 1 protein-coding 8887 7 - 27771251 27771273 12 0 protein-coding 317 hg38 Updated: 2019-02-17 Owner: ChiTaRS	CHI3L1 A0A024R969 H0Y3U8 P36222 Q9NY39 Q9NY40 Q9NY41 NM_001276.2	1..301 100.0%	- 1	TAX1BP1 B8ZZD4 C9J7J4 C9JBZ7 F8WBU9 H7C3L5 L8E7U3 Q86VP1 V9GZ06 NM_001079864.2	296..317 100.0%	- 7	0 1264 0	exon-intron
2 Homo Sapiens	BG929350 ANNOTATION OF CHIMERA FUSION GenBank ID: BG929350 FASTA Head Gene (1) Alignment: TAX1BP1 | OMIM: 605326 Tail Gene (2) Alignment: CHI3L1 | OMIM: 601525 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 8887 7 + 27769612 27770009 5 0 protein-coding 1116 1 - 203178931 203178988 10 1 protein-coding 582 hg38 Updated: 2019-02-21 Owner: ChiTaRS	TAX1BP1 B8ZZD4 C9J7J4 C9JBZ7 F8WBU9 H7C3L5 L8E7U3 Q86VP1 V9GZ06 NM_001079864.2	86..490 97.7%	+ 7	CHI3L1 A0A024R969 H0Y3U8 P36222 Q9NY39 Q9NY40 Q9NY41 NM_001276.2	459..516 100.0%	- 1	0 1264 0	intron-exon
3 Homo Sapiens	BF914338 ANNOTATION OF CHIMERA FUSION GenBank ID: BF914338 FASTA Head Gene (1) Alignment: CHI3L1 | OMIM: 601525 Tail Gene (2) Alignment: THBS3-AS1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1116 1 - 203183653 203183722 6 1 protein-coding 105371450 1 + 155199800 155199854 1 0 ncRNA 120 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to TSP_3 (PF02412, IPR003367) 36 167 204 1.5e-15 43.000 Thrombospondin type 3 repeat TSP_C (PF05735, IPR008859) 198 298 495 8.4e-101 322.000 Thrombospondin C-terminal region Updated: 2019-02-20 Owner: ChiTaRS	CHI3L1 A0A024R969 H0Y3U8 P36222 Q9NY39 Q9NY40 Q9NY41 NM_001276.2	1..70 98.6%	- 1	THBS3-AS1 XR_922166.3	66..120 98.2%	+ 1	1 0 0	exon-intron
4 Homo Sapiens	BF912932 ANNOTATION OF CHIMERA FUSION GenBank ID: BF912932 FASTA Head Gene (1) Alignment: CHI3L1 | OMIM: 601525 Tail Gene (2) Alignment: THBS3-AS1 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1116 1 - 203183653 203183722 6 1 protein-coding 105371450 1 + 155199800 155199854 1 0 ncRNA 120 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to TSP_3 (PF02412, IPR003367) 36 167 204 1.5e-15 43.000 Thrombospondin type 3 repeat TSP_C (PF05735, IPR008859) 198 298 495 8.4e-101 322.000 Thrombospondin C-terminal region Updated: 2019-02-20 Owner: ChiTaRS	CHI3L1 A0A024R969 H0Y3U8 P36222 Q9NY39 Q9NY40 Q9NY41 NM_001276.2	1..70 98.6%	- 1	THBS3-AS1 XR_922166.3	66..120 100.0%	+ 1	1 0 0	exon-intron
5 Homo Sapiens	BF342380 ANNOTATION OF CHIMERA FUSION GenBank ID: BF342380 FASTA Head Gene (1) Alignment: CHI3L1 | OMIM: 601525 Tail Gene (2) Alignment: GMDS | OMIM: 602884 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1116 1 - 203178936 203179772 2 1 protein-coding 2762 6 + 2235637 2235845 1 0 protein-coding 816 hg38 Updated: 2019-01-02 Owner: ChiTaRS	CHI3L1 A0A024R969 H0Y3U8 P36222 Q9NY39 Q9NY40 Q9NY41 NM_001276.2	1..660 99.9%	- 1	GMDS O60547 XR_001743349.2	656..689 97.0%	+ 6	1 0 0	exon-intron
6 Homo Sapiens	BQ181650 ANNOTATION OF CHIMERA FUSION GenBank ID: BQ181650 FASTA Head Gene (1) Alignment: CHI3L1 | OMIM: 601525 Tail Gene (2) Alignment: NEDD4L | OMIM: 606384 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1116 1 + 203178931 203179092 1 1 protein-coding 23327 18 + 58131507 58131989 33 0 oncogene, tumor suppressor, protein-coding 645 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Glyco_hydro_18 (PF00704, IPR001223) 312 274 371 1.9e-13 36.900 Glycosyl hydrolases family 18 Updated: 2019-02-21 Owner: ChiTaRS	CHI3L1 A0A024R969 H0Y3U8 P36222 Q9NY39 Q9NY40 Q9NY41 NM_001276.2	19..180 100.0%	+ 1	NEDD4L A0A024R281 A0A024R2A4 A0A087WVI6 A0A140TA85 A0A1B0GVY1 K7EKL1 K7EN51 K7ENS6 K7EQC5 K7ERN1 Q5XLQ3 Q7Z4N9 Q7Z4P0 Q96PU5 XM_024451134.1	164..645 98.0%	+ 18	1 0 0	exon-intron
7 Homo Sapiens	HW818230 ANNOTATION OF CHIMERA FUSION GenBank ID: HW818230 FASTA Head Gene (1) Alignment: CHI3L1 | OMIM: 601525 Tail Gene (2) Alignment: EDIL3 | OMIM: 606018 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1116 1 - 203178931 203186794 10 1 protein-coding 10085 5 - 83983743 83983766 9 0 protein-coding 1867 hg38 Updated: 2019-02-07 Owner: ChiTaRS	CHI3L1 A0A024R969 H0Y3U8 P36222 Q9NY39 Q9NY40 Q9NY41 NM_001276.2	1..1837 100.0%	- 1	EDIL3 O43854 NM_005711.4	1831..1854 100.0%	- 5	1 0 0	exon-intron
8 Homo Sapiens	DB159477 ANNOTATION OF CHIMERA FUSION GenBank ID: DB159477 FASTA Head Gene (1) Alignment: CHI3L1 | OMIM: 601525 Tail Gene (2) Alignment: CHI3L1 | OMIM: 601525 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 1116 1 - 203184793 203184865 7 0 protein-coding 1116 1 - 203182491 203186704 6 0 protein-coding 597 hg38 Updated: 2019-02-21 Owner: ChiTaRS	CHI3L1 A0A024R969 H0Y3U8 P36222 Q9NY39 Q9NY40 Q9NY41 NM_001276.2	1..73 100.0%	- 1	CHI3L1 A0A024R969 H0Y3U8 P36222 Q9NY39 Q9NY40 Q9NY41 NM_001276.2	74..597 100.0%	- 1	1 0 0	intron-intron
9 Homo Sapiens	AW376261 ANNOTATION OF CHIMERA FUSION GenBank ID: AW376261 FASTA Head Gene (1) Alignment: XPNPEP1 | OMIM: 602443 Tail Gene (2) Alignment: CHI3L1 | OMIM: 601525 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 7511 10 - 109873378 109875592 8 1 protein-coding 1116 1 + 203179824 203179879 9 1 protein-coding 185 hg38 Domains of the full fusion Envelope E-value Score Description name (Pfam, InterPro, SMART) length from to Creatinase_N (PF01321, IPR000587) 132 53 197 6.7e-16 45.400 Creatinase/Prolidase N-terminal domain Creatinase_N_2 (PF16189) 159 200 369 8.3e-51 158.400 Creatinase/Prolidase N-terminal domain Peptidase_M24 (PF00557, IPR001714) 209 371 463 1.6e-13 36.900 Metallopeptidase family M24 Glyco_hydro_18 (PF00704, IPR001223) 312 504 558 2e-14 40.100 Glycosyl hydrolases family 18 Updated: 2019-02-20 Owner: ChiTaRS	XPNPEP1 Q5T6H2 Q5T6H3 Q5T6H7 Q9NQW7 NM_001324133.1	1..114 98.3%	- 10	CHI3L1 A0A024R969 H0Y3U8 P36222 Q9NY39 Q9NY40 Q9NY41 NM_001276.2	114..169 100.0%	+ 1	1 0 0	exon-exon
10 Homo Sapiens	AV707858 ANNOTATION OF CHIMERA FUSION GenBank ID: AV707858 FASTA Head Gene (1) Alignment: SMTN | OMIM: 602127 Tail Gene (2) Alignment: CHI3L1 | OMIM: 601525 Qsize UCSC Version Location: exons highlight1 Location: exons highlight2 Entrez GeneID1 chromo- some1 strand1 start_loc1 end_loc1 total1 overlap1 Entrez GeneID2 chromo- some2 strand2 start_loc2 end_loc2 total2 overlap2 18 19 7 20 21 22 23 - 24 25 12 26 27 28 29 - 30 31 6525 22 + 31081887 31082193 1 0 protein-coding 1116 1 - 203179040 203179482 10 1 protein-coding 758 hg38 Updated: 2019-02-20 Owner: ChiTaRS	SMTN A0A087WVP4 A0A087X1R1 A0A096LNK9 B5MCI0 C9JBH9 C9JGQ0 C9JP19 C9JQZ8 C9JV14 C9JYU8 H7BZZ8 H7C372 P53814 XM_011530333.3	1..307 100.0%	+ 22	CHI3L1 A0A024R969 H0Y3U8 P36222 Q9NY39 Q9NY40 Q9NY41 NM_001276.2	302..742 97.1%	- 1	1 0 0	intron-exon

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