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Rank: Junction Consistence: Sense-ANTIsense

Read-through Chimeras Mass-spec Hits Breakpoints RNAseq evidence
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search: Gene Name/NCBI ID(s): 'CD52'

Total of fusion sequences: 1 (from 393,531 parsed EST/mRNAs. Last update 2018-11-20)

Organism Fusion:
Graphical View,
Annotation, PPI 		Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y) 		RNAseq,
Mass-spec
evidences		 Cancer
Breakpoint,
PubMed, iHOP
reference
Name(s)1 Start1..End1
Ident1% 		Strand1
Chrom1 		Name(s)2 Start2..End2
Ident2% 		Strand2
Chrom2
1234,5,67,1789,10,1112,2513,14,151617
Homo Sapiens

ANNOTATION OF CHIMERA FUSION

GenBank ID: BP392752 FASTA
Head Gene (1) Alignment: FN1 | OMIM: 135600 Tail Gene (2) Alignment: CD52 | OMIM: 114280 Qsize UCSC
Version
Location:
 exons highlight1 Location:
 exons highlight2
Entrez
GeneID1		 chromo-
some1		 strand1 start_loc1 end_loc1 total1 overlap1 Entrez
GeneID2		 chromo-
some2		 strand2 start_loc2 end_loc2 total2 overlap2
1819720212223-24251226272829-3031
23352+216230228216232620NANAoncogene10431+2664668326647013NANAoncogene NA hg19

Domains of the full fusion Envelope E-value Score Description
name (Pfam, InterPro, SMART) length from to
fn1 (PF00039, IPR000083, SM00058) 40 52 87 1.1e-13 37.500 Fibronectin type I domain
fn2 (PF00040, IPR000562, SM00059) 42 360 401 1.8e-21 62.500 Fibronectin type II domain
fn3 (PF00041, IPR003961, SM00060) 85 609 692 3.5e-16 45.700 Fibronectin type III domain
DUF2369 (PF10179, IPR019326) 95 859 926 6.4e-07 16.100 Uncharacterised conserved protein (DUF2369)
Updated: 2012-12-12
Owner: ChiTaRS
15..175
100.0%		+
2		 171..502
98.5%		+
1		1
0
0