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Rank: Junction Consistence: Hi-C Sense-ANTIsense

Mass-spec hits Read-through chimeras Breakpoints RNAseq evidence
UniProtKB hits
Organisms
Homo Sapiens Mus musculus D.Melanogaster
Rattus Norvegicus Bos Taurus Danio Rerio
Saccharomyces Cerevisiae Sus ScrofaAll organisms

Result for the search of Gene Name/NCBI ID(s): 'CD44'

Total of fusion sequences: 16 (from 1,393,046 parsed EST/mRNAs. Last update 2019-09-04)

Organism Fusion:
Graphical View,
Annotation,
PPI network
Head Gene (1) Tail Gene (2) Rank,
Deviation:
Eloc(x)
Sloc(y)
Fusion type RNA Hi-C,
RNAseq,
Mass-spec
evidences
Cancer
Breakpoint,
PubMed(s)
Name(s)1,
transcript
Start1..End1
Ident1%
Strand1
Chrom1
Name(s)2,
transcript
Start2..End2
Ident2%
Strand2
Chrom2
1234,5,67,1989,10,1112,2513,14,15321617
1
Homo Sapiens
SplGraphs
NM_001256120.1
1..325
100.0%
-
X

XM_005253232.3
320..583
97.8%
+
11
1
0
0
exon-exon
2
Homo Sapiens

XM_005253232.3
1..204
100.0%
+
11

NM_003477.2
200..567
99.8%
+
11
1
0
0
exon-exon4RNA-seq
3
Homo Sapiens

NM_001291411.1
22..230
100.0%
-
21

XM_005253232.3
217..320
97.2%
+
11
1
0
0
exon-exon
4
Homo Sapiens

XM_005253232.3
1..148
99.4%
-
11

XM_005253232.3
144..374
99.2%
+
11
0
27804
27823
intron-intron
5
Homo Sapiens

XM_005253232.3
18..147
100.0%
-
11

XM_005253232.3
143..303
100.0%
+
11
0
2039
2041
exon-exon
6
Homo Sapiens

XM_005253232.3
1..57
100.0%
-
11

XM_005253232.3
52..487
98.4%
+
11
0
2039
2041
exon-exon
7
Homo Sapiens

NM_020548.7
1..524
100.0%
+
2

XM_005253231.3
407..542
97.7%
-
11
0
0
1169
exon-intron
8
Homo Sapiens

XM_005253232.3
1..135
97.6%
+
11

NM_001282635.1
18..499
99.4%
-
2
2
0
42
intron-exon
9
Homo Sapiens

XM_005253231.3
1..136
97.7%
+
11

NM_020548.7
19..451
99.8%
-
2
2
0
42
intron-exon
10
Homo Sapiens

XM_011529746.2
12..369
97.5%
+
21

XM_005253232.3
370..617
99.2%
+
11
1
0
0
exon-intron

T o p